RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 BIN2Q9UBW5 565 aaPredicted RBP22.25■■□□□ 1.15
CLSTN3-214ENST00000542663 SLURP2P0DP57 97 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 PTPRAP18433 802 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 PHKA1P46020 1223 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 RGS3P49796 1198 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 UBXN2AP68543 259 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 SLAIN1Q8ND83 568 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 HTATIP2Q9BUP3 242 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 IDI2Q9BXS1 227 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 AFG3L2Q9Y4W6 797 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 ZHX2Q9Y6X8 837 aa22.24■■□□□ 1.15
CLSTN3-214ENST00000542663 PLXNB2O15031 1838 aa22.23■■□□□ 1.15
CLSTN3-214ENST00000542663 CIAO1O76071 339 aa22.23■■□□□ 1.15
CLSTN3-214ENST00000542663 MAP3K10Q02779 954 aa22.23■■□□□ 1.15
CLSTN3-214ENST00000542663 FBXO3Q9UK99 471 aa22.23■■□□□ 1.15
CLSTN3-214ENST00000542663 GAKO14976 1311 aa22.23■■□□□ 1.15
CLSTN3-214ENST00000542663 ENTPD3O75355 529 aa22.22■■□□□ 1.15
CLSTN3-214ENST00000542663 FASTKD5Q7L8L6 764 aaKnown RBP22.22■■□□□ 1.15
CLSTN3-214ENST00000542663 GNL3LQ9NVN8 582 aaKnown RBP22.22■■□□□ 1.15
CLSTN3-214ENST00000542663 DENND2AQ9ULE3 1009 aa22.22■■□□□ 1.15
CLSTN3-214ENST00000542663 CDK5RAP2Q96SN8 1893 aa22.22■■□□□ 1.15
CLSTN3-214ENST00000542663 DDTLA6NHG4 134 aaPredicted RBP22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 SEMA3EO15041 775 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 ADCY3O60266 1144 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 FARP2O94887 1054 aaPredicted RBP22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 SGPL1O95470 568 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 ELNP15502 786 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 FLT3LGP49771 235 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 GADL1Q6ZQY3 521 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 CEP126Q9P2H0 1117 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 SLC45A1Q9Y2W3 748 aa22.21■■□□□ 1.15
CLSTN3-214ENST00000542663 LAMA3Q16787 3333 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 ZBTB7BO15156 539 aaPredicted RBP22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 ZBTB22O15209 634 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 ADORA1P30542 326 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 DDX4Q9NQI0 724 aaKnown RBP22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 PICK1Q9NRD5 415 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 COL6A3P12111 3177 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 SIPA1L1O43166 1804 aa22.2■■□□□ 1.14
CLSTN3-214ENST00000542663 CCDC102BQ68D86 513 aa22.19■■□□□ 1.14
CLSTN3-214ENST00000542663 PXYLP1Q8TE99 480 aa22.19■■□□□ 1.14
CLSTN3-214ENST00000542663 PA2G4Q9UQ80 394 aaKnown RBP22.19■■□□□ 1.14
CLSTN3-214ENST00000542663 INHAP05111 366 aa22.18■■□□□ 1.14
CLSTN3-214ENST00000542663 NR2E3Q9Y5X4 410 aa22.18■■□□□ 1.14
CLSTN3-214ENST00000542663 DDX60LQ5H9U9 1706 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 E9PSI1 815 aa22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 TNPO2O14787 897 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 CTNND1O60716 968 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 UBTFL1P0CB47 393 aaPredicted RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 IL15P40933 162 aaPredicted RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 IRF5Q13568 498 aa22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 RASGRF1Q13972 1273 aa22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 ALDH1L2Q3SY69 923 aa22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 CCDC84Q86UT8 332 aaPredicted RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 ZSCAN29Q8IWY8 852 aaPredicted RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 ZGPATQ8N5A5 531 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 LRRFIP2Q9Y608 721 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-214ENST00000542663 FOCADQ5VW36 1801 aa22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 TRIM75PA6NK02 468 aa22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 SLFN5Q08AF3 891 aa22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 SMCR8Q8TEV9 937 aaPredicted RBP22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 FAM163AQ96GL9 167 aaPredicted RBP22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 DEFB118Q96PH6 123 aa22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 PAK6Q9NQU5 681 aaPredicted RBP22.16■■□□□ 1.14
CLSTN3-214ENST00000542663 MYO5AQ9Y4I1 1855 aaKnown RBP22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 PDS5AQ29RF7 1337 aaKnown RBP22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 BTDP43251 543 aa22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 PICALMQ13492 652 aa22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 TREML2Q5T2D2 321 aa22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 DZIP1Q86YF9 867 aaKnown RBP22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 ZNF384Q8TF68 577 aa22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 AGTPBP1Q9UPW5 1226 aa22.15■■□□□ 1.14
CLSTN3-214ENST00000542663 MROH7-TTC4A0A0A0MT08 1334 aa22.14■■□□□ 1.14
CLSTN3-214ENST00000542663 ANKRD13CQ8N6S4 541 aa22.14■■□□□ 1.13
CLSTN3-214ENST00000542663 CRISPLD2Q9H0B8 497 aa22.14■■□□□ 1.13
CLSTN3-214ENST00000542663 COPRSQ9NQ92 184 aa22.14■■□□□ 1.13
CLSTN3-214ENST00000542663 SMC4Q9NTJ3 1288 aa22.14■■□□□ 1.13
CLSTN3-214ENST00000542663 ABCF2Q9UG63 623 aa22.14■■□□□ 1.13
CLSTN3-214ENST00000542663 SOX1O00570 391 aaPredicted RBP22.13■■□□□ 1.13
CLSTN3-214ENST00000542663 EVI5O60447 810 aa22.13■■□□□ 1.13
CLSTN3-214ENST00000542663 TFRCP02786 760 aaKnown RBP22.13■■□□□ 1.13
CLSTN3-214ENST00000542663 RHBDL3P58872 404 aa22.13■■□□□ 1.13
CLSTN3-214ENST00000542663 TIMM10P62072 90 aa22.13■■□□□ 1.13
CLSTN3-214ENST00000542663 A0A1W2PPC1 479 aa22.12■■□□□ 1.13
CLSTN3-214ENST00000542663 FAM196BA6NMK8 535 aa22.12■■□□□ 1.13
CLSTN3-214ENST00000542663 TBC1D12O60347 775 aa22.12■■□□□ 1.13
CLSTN3-214ENST00000542663 SLF2Q8IX21 1173 aa22.12■■□□□ 1.13
CLSTN3-214ENST00000542663 MAST2Q6P0Q8 1798 aa22.12■■□□□ 1.13
CLSTN3-214ENST00000542663 COL2A1P02458 1487 aaPredicted RBP22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 GPR75-ASB3A0A0A6YYF3 556 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 CAPN2P17655 700 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 MECOMQ03112 1051 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 FAM110CQ1W6H9 321 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 DIS3LQ8TF46 1054 aaKnown RBP22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 COA7Q96BR5 231 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 CDCA7LQ96GN5 454 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 PAWRQ96IZ0 340 aaKnown RBP22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 TAOK2Q9UL54 1235 aa22.11■■□□□ 1.13
CLSTN3-214ENST00000542663 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms