RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ATP8A2Q9NTI2 1148 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 AK9Q5TCS8 1911 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 CCDC171Q6TFL3 1326 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 RAD50Q92878 1312 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 CNTNAP1P78357 1384 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 ZNF589Q86UQ0 364 aaPredicted RBP20.53■□□□□ 0.88
LIG1-204ENST00000542460 MAPKAPK5Q8IW41 473 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 SMC1BQ8NDV3 1235 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 SDR42E1Q8WUS8 393 aa20.53■□□□□ 0.88
LIG1-204ENST00000542460 GLIS2Q9BZE0 524 aaPredicted RBP20.53■□□□□ 0.88
LIG1-204ENST00000542460 FLT1P17948 1338 aa20.52■□□□□ 0.88
LIG1-204ENST00000542460 PATL2C9JE40 543 aaKnown RBP20.52■□□□□ 0.87
LIG1-204ENST00000542460 DDRGK1Q96HY6 314 aa20.52■□□□□ 0.87
LIG1-204ENST00000542460 OSBPL5Q9H0X9 879 aaPredicted RBP20.52■□□□□ 0.87
LIG1-204ENST00000542460 MKRN1Q9UHC7 482 aaKnown RBP20.52■□□□□ 0.87
LIG1-204ENST00000542460 RPAP1Q9BWH6 1393 aaPredicted RBP20.51■□□□□ 0.87
LIG1-204ENST00000542460 GSG1L2A8MUP6 293 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 ADM5C9JUS6 153 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 SGSM2O43147 1006 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 GIMAP6Q6P9H5 292 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 ZFPM1Q8IX07 1006 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 TMEM39BQ9GZU3 492 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 DCP1AQ9NPI6 582 aaPredicted RBP20.51■□□□□ 0.87
LIG1-204ENST00000542460 ECM29Q5VYK3 1845 aa20.51■□□□□ 0.87
LIG1-204ENST00000542460 APPP05067 770 aa20.5■□□□□ 0.87
LIG1-204ENST00000542460 ESYT1Q9BSJ8 1104 aa20.5■□□□□ 0.87
LIG1-204ENST00000542460 NACAP1Q9BZK3 213 aa20.5■□□□□ 0.87
LIG1-204ENST00000542460 IL25Q9H293 177 aa20.5■□□□□ 0.87
LIG1-204ENST00000542460 ITGBL1O95965 494 aaPredicted RBP20.49■□□□□ 0.87
LIG1-204ENST00000542460 ZSCAN29Q8IWY8 852 aaPredicted RBP20.49■□□□□ 0.87
LIG1-204ENST00000542460 DHX36Q9H2U1 1008 aaKnown RBP20.49■□□□□ 0.87
LIG1-204ENST00000542460 HSPD1P10809 573 aaKnown RBP20.48■□□□□ 0.87
LIG1-204ENST00000542460 VPS53Q5VIR6 699 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 IFNL3Q8IZI9 196 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 TEPSINQ96N21 525 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 MCM9Q9NXL9 1143 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 SUPT20HL1Q3ZLR7 823 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 PRAMEF18Q5VWM3 479 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 DLK2Q6UY11 383 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 SH3BP5LQ7L8J4 393 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 CDCA5Q96FF9 252 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 SAP30BPQ9UHR5 308 aaKnown RBP20.48■□□□□ 0.87
LIG1-204ENST00000542460 PALD1Q9ULE6 856 aa20.48■□□□□ 0.87
LIG1-204ENST00000542460 ATRNL1Q5VV63 1379 aa20.47■□□□□ 0.87
LIG1-204ENST00000542460 COL2A1P02458 1487 aaPredicted RBP20.47■□□□□ 0.87
LIG1-204ENST00000542460 DDTLA6NHG4 134 aaPredicted RBP20.47■□□□□ 0.87
LIG1-204ENST00000542460 TRAF5O00463 557 aa20.47■□□□□ 0.87
LIG1-204ENST00000542460 FOXP2O15409 715 aa20.47■□□□□ 0.87
LIG1-204ENST00000542460 HOOK2Q96ED9 719 aa20.47■□□□□ 0.87
LIG1-204ENST00000542460 CSRNP1Q96S65 589 aa20.47■□□□□ 0.87
LIG1-204ENST00000542460 EPB41L4AQ9HCS5 686 aaPredicted RBP20.47■□□□□ 0.87
LIG1-204ENST00000542460 POLR3DP05423 398 aaPredicted RBP20.46■□□□□ 0.87
LIG1-204ENST00000542460 TDO2P48775 406 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 ALX1Q15699 326 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 NBPF12Q5TAG4 269 aaPredicted RBP20.46■□□□□ 0.87
LIG1-204ENST00000542460 KIAA1211Q6ZU35 1233 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 TTC6Q86TZ1 520 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 AMOTL1Q8IY63 956 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 DSCC1Q9BVC3 393 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 NAPBQ9H115 298 aa20.46■□□□□ 0.87
LIG1-204ENST00000542460 USP17L12C9JPN9 530 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 USP17L21D6R901 530 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 HLA-DOAP06340 250 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 NF2P35240 595 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 HTRA3P83110 453 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 CDAN1Q8IWY9 1227 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 PI4KBQ9UBF8 816 aa20.45■□□□□ 0.86
LIG1-204ENST00000542460 ARPP21Q9UBL0 812 aaPredicted RBP20.45■□□□□ 0.86
LIG1-204ENST00000542460 FGAP02671 866 aa20.44■□□□□ 0.86
LIG1-204ENST00000542460 SBK1Q52WX2 424 aa20.44■□□□□ 0.86
LIG1-204ENST00000542460 CTR9Q6PD62 1173 aa20.44■□□□□ 0.86
LIG1-204ENST00000542460 ZMYM6O95789 1325 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 PASKQ96RG2 1323 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 C12orf60Q5U649 245 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 FOXP4Q8IVH2 680 aaPredicted RBP20.43■□□□□ 0.86
LIG1-204ENST00000542460 POLR2AP24928 1970 aaKnown RBP20.43■□□□□ 0.86
LIG1-204ENST00000542460 PLCD1P51178 756 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 FMR1Q06787 632 aaKnown RBP eCLIP20.43■□□□□ 0.867e-8■■□□□ 12.6
LIG1-204ENST00000542460 SLC4A8Q2Y0W8 1093 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 ANO2Q9NQ90 1003 aa20.43■□□□□ 0.86
LIG1-204ENST00000542460 FOCADQ5VW36 1801 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 PTH1RQ03431 593 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 DCAF15Q66K64 600 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 MAP4K1Q92918 833 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 LSG1Q9H089 658 aaKnown RBP20.42■□□□□ 0.86
LIG1-204ENST00000542460 EHD4Q9H223 541 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 CTNNA3Q9UI47 895 aa20.42■□□□□ 0.86
LIG1-204ENST00000542460 CDK5RAP2Q96SN8 1893 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 MINDY4BA8MYZ0 360 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 TBC1D12O60347 775 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 CELF2O95319 508 aaKnown RBP20.41■□□□□ 0.86
LIG1-204ENST00000542460 CYP2D6P10635 497 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 MAP3K10Q02779 954 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 METTL16Q86W50 562 aaKnown RBP20.41■□□□□ 0.86
LIG1-204ENST00000542460 DNAJC5GQ8N7S2 189 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 ZNF408Q9H9D4 720 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 HERC5Q9UII4 1024 aaKnown RBP20.41■□□□□ 0.86
LIG1-204ENST00000542460 SERPINB13Q9UIV8 391 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 TAOK2Q9UL54 1235 aa20.41■□□□□ 0.86
LIG1-204ENST00000542460 CYP2D7A0A087X1C5 515 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms