RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 RTFDC1Q9BY42 306 aaPredicted RBP6.85□□□□□ -1.31
DDB1-219ENST00000541513 BCO2Q9BYV7 579 aa6.85□□□□□ -1.31
DDB1-219ENST00000541513 NGRNQ9NPE2 291 aaKnown RBP6.85□□□□□ -1.31
DDB1-219ENST00000541513 FAM135AQ9P2D6 1515 aa6.85□□□□□ -1.31
DDB1-219ENST00000541513 FER1L4A9Z1Z3 1794 aa6.85□□□□□ -1.31
DDB1-219ENST00000541513 ERBINQ96RT1 1412 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 DEPDC5O75140 1603 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 MAGEB6P1A0A0J9YX57 407 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 EYA4O95677 639 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 EIF6P56537 245 aaKnown RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 CNGB1Q14028 1251 aaPredicted RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 RTN1Q16799 776 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 ZC3H12BQ5HYM0 836 aaKnown RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 PRPF40BQ6NWY9 871 aaKnown RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 XKR5Q6UX68 686 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 BPHLQ86WA6 291 aaPredicted RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 TRMT44Q8IYL2 757 aaKnown RBP6.84□□□□□ -1.31
DDB1-219ENST00000541513 UNC93B1Q9H1C4 597 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 STRN4Q9NRL3 753 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 FAM13BQ9NYF5 915 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 UBP1Q9NZI7 540 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 ZMYM5Q9UJ78 669 aa6.84□□□□□ -1.31
DDB1-219ENST00000541513 KLRG2A4D1S0 409 aaPredicted RBP6.83□□□□□ -1.32
DDB1-219ENST00000541513 KATNA1O75449 491 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 TNFRSF21O75509 655 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 ZRANB2O95218 330 aaKnown RBP eCLIP6.83□□□□□ -1.32
DDB1-219ENST00000541513 SRGNP10124 158 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 CPEP16870 476 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 SSRP1Q08945 709 aaKnown RBP6.83□□□□□ -1.32
DDB1-219ENST00000541513 APOBRQ0VD83 1088 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 SPATC1Q76KD6 591 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 C3orf58Q8NDZ4 430 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 TTC16Q8NEE8 873 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 ATL2Q8NHH9 583 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 SNX29Q8TEQ0 813 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 NKD1Q969G9 470 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 CHMP4CQ96CF2 233 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 CDC5LQ99459 802 aaKnown RBP6.83□□□□□ -1.32
DDB1-219ENST00000541513 LRRC3Q9BY71 257 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 ETNK1Q9HBU6 452 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 LUZP4Q9P127 313 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 SEPT9Q9UHD8 586 aaPredicted RBP6.83□□□□□ -1.32
DDB1-219ENST00000541513 PPM1HQ9ULR3 514 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 GTF2A1LQ9UNN4 478 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 CHMP3Q9Y3E7 222 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 MROH1Q8NDA8 1641 aa6.83□□□□□ -1.32
DDB1-219ENST00000541513 RPGRIP1LQ68CZ1 1315 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 MROH2AA6NES4 1674 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ZC3H13Q5T200 1668 aaKnown RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 PRRT4C9JH25 899 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 IRS4O14654 1257 aaPredicted RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 BCAMP50895 628 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 CASP7P55210 303 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 PABPC4Q13310 644 aaKnown RBP eCLIP6.82□□□□□ -1.32
DDB1-219ENST00000541513 DGKZQ13574 1117 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 KRT72Q14CN4 511 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 CCDC85BQ15834 202 aaPredicted RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 C8orf34Q49A92 452 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ZNF787Q6DD87 383 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 CXorf57Q6NSI4 855 aaKnown RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 CCDC81Q6ZN84 652 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 PODNQ7Z5L7 613 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 PASD1Q8IV76 773 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 CPXCR1Q8N123 301 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ENAHQ8N8S7 591 aaPredicted RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 PHC3Q8NDX5 983 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 GPR152Q8TDT2 470 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ATXN2LQ8WWM7 1075 aaKnown RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 IFT43Q96FT9 208 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 OSBPL3Q9H4L5 887 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ZFYVE28Q9HCC9 887 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 RRP7BPQ9NSQ0 103 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 HFM1A2PYH4 1435 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ANKRD50Q9ULJ7 1429 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 SETD1BQ9UPS6 1966 aaKnown RBP6.82□□□□□ -1.32
DDB1-219ENST00000541513 UNC13BO14795 1591 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 ROBO2Q9HCK4 1378 aa6.82□□□□□ -1.32
DDB1-219ENST00000541513 PRDM15P57071 1507 aaPredicted RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 KDM5DQ9BY66 1539 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 MADDQ8WXG6 1647 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 A6NHS1 94 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 SLC26A4O43511 780 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 RNASEH2AO75792 299 aaKnown RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 ABLIM3O94929 683 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 GJB6O95452 261 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 PTMAP06454 111 aaKnown RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 CRKP46108 304 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 PICALMQ13492 652 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 MTMR1Q13613 665 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 LAPTM4BQ86VI4 370 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 SCUBE3Q8IX30 993 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 HOOK2Q96ED9 719 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 SLC26A8Q96RN1 970 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 STRBPQ96SI9 672 aaKnown RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 TRIM56Q9BRZ2 755 aaKnown RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 HERPUD2Q9BSE4 406 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 SARGQ9BW04 601 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 RSPH9Q9H1X1 276 aaPredicted RBP6.81□□□□□ -1.32
DDB1-219ENST00000541513 SUV39H2Q9H5I1 410 aa6.81□□□□□ -1.32
DDB1-219ENST00000541513 NPHS2Q9NP85 383 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms