RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 USP49Q70CQ1 688 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 NGLY1Q96IV0 654 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 ERVV-1B6SEH8 477 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 SLC3A2P08195 630 aaKnown RBP19.6■□□□□ 0.73
USP28-208ENST00000540438 TDRD7Q8NHU6 1098 aaKnown RBP19.6■□□□□ 0.73
USP28-208ENST00000540438 AATFQ9NY61 560 aaKnown RBP eCLIP19.6■□□□□ 0.73
USP28-208ENST00000540438 GOLGA6L6A8MZA4 724 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 CYP2D6P10635 497 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 RBM43Q6ZSC3 357 aaKnown RBP19.6■□□□□ 0.73
USP28-208ENST00000540438 ZMYM6O95789 1325 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 AKAP11Q9UKA4 1901 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 TRIM29Q14134 588 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 PLA2G4DQ86XP0 818 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 STAMQ92783 540 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 VPS54Q9P1Q0 977 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 FBXO3Q9UK99 471 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 RIOK3O14730 519 aaKnown RBP19.59■□□□□ 0.73
USP28-208ENST00000540438 WTAPQ15007 396 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 AXDND1Q5T1B0 1012 aaPredicted RBP19.59■□□□□ 0.73
USP28-208ENST00000540438 SHC4Q6S5L8 630 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 IFNKQ9P0W0 207 aa19.59■□□□□ 0.73
USP28-208ENST00000540438 VEGFAP15692 232 aaPredicted RBP19.58■□□□□ 0.73
USP28-208ENST00000540438 NTRK3Q16288 839 aa19.58■□□□□ 0.73
USP28-208ENST00000540438 SSRP1Q08945 709 aaKnown RBP19.58■□□□□ 0.72
USP28-208ENST00000540438 TPD52L1Q16890 204 aaPredicted RBP19.58■□□□□ 0.72
USP28-208ENST00000540438 ANKRD18AQ8IVF6 992 aa19.58■□□□□ 0.72
USP28-208ENST00000540438 KIAA1468Q9P260 1216 aa19.58■□□□□ 0.72
USP28-208ENST00000540438 PRDX5P30044 214 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 SYKP43405 635 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 LONRF3Q496Y0 759 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 DIS3L2Q8IYB7 885 aaKnown RBP19.57■□□□□ 0.72
USP28-208ENST00000540438 EVCP57679 992 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 CEP57L1Q8IYX8 460 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 ZNF384Q8TF68 577 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 GNPATO15228 680 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 UBAC1Q9BSL1 405 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 TMX1Q9H3N1 280 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 CABP5Q9NP86 173 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 ANO10Q9NW15 660 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 PCDHB6Q9Y5E3 794 aa19.57■□□□□ 0.72
USP28-208ENST00000540438 NUP98P52948 1817 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 PPARAQ07869 468 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 CPLX2Q6PUV4 134 aaKnown RBP19.56■□□□□ 0.72
USP28-208ENST00000540438 XPO4Q9C0E2 1151 aaKnown RBP19.56■□□□□ 0.72
USP28-208ENST00000540438 MAGEB6P1A0A0J9YX57 407 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 PLEKHA8P1O95397 391 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 RTN1Q16799 776 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 EARS2Q5JPH6 523 aaKnown RBP19.56■□□□□ 0.72
USP28-208ENST00000540438 TMC6Q7Z403 805 aa19.56■□□□□ 0.72
USP28-208ENST00000540438 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.56■□□□□ 0.72
USP28-208ENST00000540438 MYH14Q7Z406 1995 aaKnown RBP19.55■□□□□ 0.72
USP28-208ENST00000540438 USP17L12C9JPN9 530 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 USP17L21D6R901 530 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 WNT7AO00755 349 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 ADAMTS3O15072 1205 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 TRMT44Q8IYL2 757 aaKnown RBP19.55■□□□□ 0.72
USP28-208ENST00000540438 MINPP1Q9UNW1 487 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 KCNG4Q8TDN1 519 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.55■□□□□ 0.72
USP28-208ENST00000540438 NACAP1Q9BZK3 213 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 PRDM10Q9NQV6 1147 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 DISP2A7MBM2 1401 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 TNKSO95271 1327 aa19.55■□□□□ 0.72
USP28-208ENST00000540438 ERICH2A1L162 156 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 SKILP12757 684 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 PDIA4P13667 645 aaKnown RBP19.54■□□□□ 0.72
USP28-208ENST00000540438 FOXP4Q8IVH2 680 aaPredicted RBP19.54■□□□□ 0.72
USP28-208ENST00000540438 DPF2Q92785 391 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 V9GY48 417 aaPredicted RBP19.54■□□□□ 0.72
USP28-208ENST00000540438 SHISA4Q96DD7 197 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 TNNT1P13805 278 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 NBPF5PQ86XG9 351 aaPredicted RBP19.54■□□□□ 0.72
USP28-208ENST00000540438 CREBRFQ8IUR6 639 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 FAM84BQ96KN1 310 aaPredicted RBP19.54■□□□□ 0.72
USP28-208ENST00000540438 POLR3EQ9NVU0 708 aa19.54■□□□□ 0.72
USP28-208ENST00000540438 TOB1P50616 345 aaPredicted RBP19.53■□□□□ 0.72
USP28-208ENST00000540438 SLC39A14Q15043 492 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 RASGRP2Q7LDG7 609 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 ZNF654Q8IZM8 581 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 ZBTB9Q96C00 473 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 ABCA3Q99758 1704 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 ABCC12Q96J65 1359 aa19.53■□□□□ 0.72
USP28-208ENST00000540438 PRR29P0C7W0 189 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 POLR2DO15514 142 aaKnown RBP19.52■□□□□ 0.72
USP28-208ENST00000540438 CDC25AP30304 524 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 AFMP43652 599 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 LRRC8AQ8IWT6 810 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 FAM177A1Q8N128 213 aaPredicted RBP19.52■□□□□ 0.72
USP28-208ENST00000540438 ZNF710Q8N1W2 664 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 CPVLQ9H3G5 476 aa19.52■□□□□ 0.72
USP28-208ENST00000540438 CNNM3Q8NE01 707 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 SPDYE4A6NLX3 237 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 PDE4BQ07343 736 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 GRIK5Q16478 980 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 BRAPQ7Z569 592 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 FANCBQ8NB91 859 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 TMEM87BQ96K49 555 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 PAPPAQ13219 1627 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 PTPAQ15257 358 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 DIXDC1Q155Q3 683 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms