RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CHAF1AQ13111 956 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-212ENST00000540304 NKX2-3Q8TAU0 364 aa11.28□□□□□ -0.6
CLIP1-212ENST00000540304 ZNF384Q8TF68 577 aa11.28□□□□□ -0.6
CLIP1-212ENST00000540304 RNF41Q9H4P4 317 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-212ENST00000540304 ELP1O95163 1332 aa11.28□□□□□ -0.6
CLIP1-212ENST00000540304 MECOMQ03112 1051 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 TMEM132AQ24JP5 1023 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 C15orf52Q6ZUT6 534 aaKnown RBP11.27□□□□□ -0.6
CLIP1-212ENST00000540304 IGDCC4Q8TDY8 1250 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 SDR42E1Q8WUS8 393 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 MAP7D2Q96T17 732 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 SCAND2PQ9GZW5 306 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-212ENST00000540304 FAM13BQ9NYF5 915 aa11.27□□□□□ -0.6
CLIP1-212ENST00000540304 CPLX1O14810 134 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 KDM4AO75164 1064 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 PTMAP06454 111 aaKnown RBP11.27□□□□□ -0.61
CLIP1-212ENST00000540304 PPARAQ07869 468 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 ZNF827Q17R98 1081 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 TMEM67Q5HYA8 995 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 SPTY2D1Q68D10 685 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-212ENST00000540304 SGMS1Q86VZ5 419 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 BRIP1Q9BX63 1249 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 INCENPQ9NQS7 918 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 ZSWIM5Q9P217 1185 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 ANAPC4Q9UJX5 808 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 TACC3Q9Y6A5 838 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 BAZ2AQ9UIF9 1905 aaKnown RBP11.27□□□□□ -0.61
CLIP1-212ENST00000540304 LRRC37AA6NMS7 1700 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 NRXN2Q9P2S2 1712 aa11.27□□□□□ -0.61
CLIP1-212ENST00000540304 SYCE3A1L190 88 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 BBOX1O75936 387 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 KIF20AO95235 890 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 APBA3O96018 575 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 HOXA10P31260 410 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 LIFRP42702 1097 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 DYNLL1P63167 89 aaKnown RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 LRSAM1Q6UWE0 723 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 ZNF804AQ7Z570 1209 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 LY9Q9HBG7 655 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 ANKRD31Q8N7Z5 1873 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 LAMB1P07942 1786 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 KLRG2A4D1S0 409 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 FDPSP14324 419 aaKnown RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 ATP2B4P23634 1241 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 PRDX5P30044 214 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 METAP2P50579 478 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 GPSM2P81274 684 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 GIMAP6Q6P9H5 292 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 APOA5Q6Q788 366 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 TTC6Q86TZ1 520 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 STK11IPQ8N1F8 1099 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 TDRD7Q8NHU6 1098 aaKnown RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 WDR66Q8TBY9 1149 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 ZNF622Q969S3 477 aaKnown RBP eCLIP11.26□□□□□ -0.611e-6■■□□□ 12.1
CLIP1-212ENST00000540304 CRAMP1Q96RY5 1269 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 MTA3Q9BTC8 594 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 DUOX1Q9NRD9 1551 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 TNS1Q9HBL0 1735 aaKnown RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 RGPD3A6NKT7 1758 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-212ENST00000540304 RGPD4Q7Z3J3 1758 aa11.26□□□□□ -0.61
CLIP1-212ENST00000540304 IFIT3O14879 490 aaKnown RBP11.25□□□□□ -0.61
CLIP1-212ENST00000540304 SART3Q15020 963 aaKnown RBP11.25□□□□□ -0.61
CLIP1-212ENST00000540304 RRP12Q5JTH9 1297 aaKnown RBP11.25□□□□□ -0.61
CLIP1-212ENST00000540304 NFXL1Q6ZNB6 911 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 TOMM22Q9NS69 142 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 MINDY4BA8MYZ0 360 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 ZBTB43O43298 467 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 CDKL5O76039 1030 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 CCDC183Q5T5S1 534 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 DZIP1Q86YF9 867 aaKnown RBP11.25□□□□□ -0.61
CLIP1-212ENST00000540304 NLGN1Q8N2Q7 840 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 ZBTB9Q96C00 473 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 SPATA32Q96LK8 384 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 SENP2Q9HC62 589 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 ORC3Q9UBD5 711 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-212ENST00000540304 LTBP1Q14766 1721 aa11.25□□□□□ -0.61
CLIP1-212ENST00000540304 UFL1O94874 794 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 RXRBP28702 533 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 CPLX2Q6PUV4 134 aaKnown RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 TMC4Q7Z404 712 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 COL23A1Q86Y22 540 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 FLAD1Q8NFF5 587 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 PLCD4Q9BRC7 762 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 CRNKL1Q9BZJ0 848 aaKnown RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 GGA1Q9UJY5 639 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 CFAP45Q9UL16 551 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 ECM29Q5VYK3 1845 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 CCDC69A6NI79 296 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 PCP11498 1178 aaKnown RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 MICU3Q86XE3 530 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 LEO1Q8WVC0 666 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 C8orf76Q96K31 380 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 AATFQ9NY61 560 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 TFIP11Q9UBB9 837 aaKnown RBP11.24□□□□□ -0.61
CLIP1-212ENST00000540304 JAG2Q9Y219 1238 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 SLC12A7Q9Y666 1083 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 NID2Q14112 1375 aa11.24□□□□□ -0.61
CLIP1-212ENST00000540304 ERICH2A1L162 156 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms