RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GRK4P32298 578 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 RASGRF1Q13972 1273 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 SH3BP5LQ7L8J4 393 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 FASTKD5Q7L8L6 764 aaKnown RBP16.86■□□□□ 0.29
SS18-204ENST00000539244 NKX2-3Q8TAU0 364 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 SLC45A1Q9Y2W3 748 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 MYPNQ86TC9 1320 aa16.86■□□□□ 0.29
SS18-204ENST00000539244 PHIPQ8WWQ0 1821 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 CEP290O15078 2479 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 DOCK1Q14185 1865 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 FMNL1O95466 1100 aaPredicted RBP16.85■□□□□ 0.29
SS18-204ENST00000539244 PTPRAP18433 802 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 SLF2Q8IX21 1173 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 RAET1EQ8TD07 263 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 MEIS3Q99687 375 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 COLQQ9Y215 455 aaPredicted RBP16.85■□□□□ 0.29
SS18-204ENST00000539244 AFG3L2Q9Y4W6 797 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 ZHX2Q9Y6X8 837 aa16.85■□□□□ 0.29
SS18-204ENST00000539244 GJB1P08034 283 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 CYP2C8P10632 490 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 GJA8P48165 433 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 FCGRTP55899 365 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 TIMM10P62072 90 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 MTX1Q13505 466 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 SPTY2D1Q68D10 685 aaPredicted RBP16.84■□□□□ 0.29
SS18-204ENST00000539244 UBE2Q1Q7Z7E8 422 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 DZIP1Q86YF9 867 aaKnown RBP16.84■□□□□ 0.29
SS18-204ENST00000539244 PICK1Q9NRD5 415 aa16.84■□□□□ 0.29
SS18-204ENST00000539244 MROH7-TTC4A0A0A0MT08 1334 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 A0A1B0GUL7 405 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 DDTLA6NHG4 134 aaPredicted RBP16.83■□□□□ 0.28
SS18-204ENST00000539244 CTNND1O60716 968 aaKnown RBP16.83■□□□□ 0.28
SS18-204ENST00000539244 NPM3O75607 178 aaKnown RBP16.83■□□□□ 0.28
SS18-204ENST00000539244 PRKCZQ05513 592 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 SLAIN1Q8ND83 568 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 ARHGAP45Q92619 1136 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 DDX4Q9NQI0 724 aaKnown RBP16.83■□□□□ 0.28
SS18-204ENST00000539244 ABCF2Q9UG63 623 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 AKAP2Q9Y2D5 859 aa16.83■□□□□ 0.28
SS18-204ENST00000539244 GPR75-ASB3A0A0A6YYF3 556 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 H0YGN5 161 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 TBC1D12O60347 775 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 ECM2O94769 699 aaPredicted RBP16.82■□□□□ 0.28
SS18-204ENST00000539244 CCL5P13501 91 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 BTDP43251 543 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 MVPQ14764 893 aaKnown RBP16.82■□□□□ 0.28
SS18-204ENST00000539244 ZSCAN29Q8IWY8 852 aaPredicted RBP16.82■□□□□ 0.28
SS18-204ENST00000539244 XAGE2Q96GT9 111 aa16.82■□□□□ 0.28
SS18-204ENST00000539244 COL2A1P02458 1487 aaPredicted RBP16.81■□□□□ 0.28
SS18-204ENST00000539244 MAP4K4O95819 1239 aaPredicted RBP16.81■□□□□ 0.28
SS18-204ENST00000539244 GNAI3P08754 354 aa16.81■□□□□ 0.28
SS18-204ENST00000539244 RARSP54136 660 aaKnown RBP16.81■□□□□ 0.28
SS18-204ENST00000539244 RHBDL3P58872 404 aa16.81■□□□□ 0.28
SS18-204ENST00000539244 UBXN2AP68543 259 aa16.81■□□□□ 0.28
SS18-204ENST00000539244 ZNF384Q8TF68 577 aa16.81■□□□□ 0.28
SS18-204ENST00000539244 TRIOBPQ9H2D6 2365 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 SRGAP3O43295 1099 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 MECOMQ03112 1051 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 TFCP2Q12800 502 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 ERICH6Q7L0X2 663 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 RNF208Q9H0X6 261 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 GABRQQ9UN88 632 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 AGTPBP1Q9UPW5 1226 aa16.8■□□□□ 0.28
SS18-204ENST00000539244 SLURP2P0DP57 97 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 CAPN2P17655 700 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 PICALMQ13492 652 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 IRF5Q13568 498 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 GADL1Q6ZQY3 521 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 PXYLP1Q8TE99 480 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.79■□□□□ 0.28
SS18-204ENST00000539244 DOCK3Q8IZD9 2030 aa16.79■□□□□ 0.28
SS18-204ENST00000539244 FLT3LGP49771 235 aa16.78■□□□□ 0.28
SS18-204ENST00000539244 U2AF1L4Q8WU68 220 aaKnown RBP16.78■□□□□ 0.28
SS18-204ENST00000539244 NSUN4Q96CB9 384 aaKnown RBP16.78■□□□□ 0.28
SS18-204ENST00000539244 HTATIP2Q9BUP3 242 aa16.78■□□□□ 0.28
SS18-204ENST00000539244 OSBPL5Q9H0X9 879 aaPredicted RBP16.78■□□□□ 0.28
SS18-204ENST00000539244 HMG20BQ9P0W2 317 aa16.78■□□□□ 0.28
SS18-204ENST00000539244 BIN2Q9UBW5 565 aaPredicted RBP16.78■□□□□ 0.28
SS18-204ENST00000539244 RANBP2P49792 3224 aaKnown RBP16.78■□□□□ 0.28
SS18-204ENST00000539244 LOC285556D6RIA3 1793 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 SZT2Q5T011 3432 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 TRIM75PA6NK02 468 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 ADCY3O60266 1144 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 LDHCP07864 332 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 ARID4AP29374 1257 aaPredicted RBP16.77■□□□□ 0.28
SS18-204ENST00000539244 PROCA1Q8NCQ7 364 aaPredicted RBP16.77■□□□□ 0.28
SS18-204ENST00000539244 SMCR8Q8TEV9 937 aaPredicted RBP16.77■□□□□ 0.28
SS18-204ENST00000539244 DPF3Q92784 378 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 TBC1D2Q9BYX2 928 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 UNC93B1Q9H1C4 597 aa16.77■□□□□ 0.28
SS18-204ENST00000539244 ATAD5Q96QE3 1844 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 TNPO2O14787 897 aaKnown RBP16.76■□□□□ 0.27
SS18-204ENST00000539244 SGPL1O95470 568 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 GSTO1P78417 241 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 FAM110CQ1W6H9 321 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 SPATA5Q8NB90 893 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.76■□□□□ 0.27
SS18-204ENST00000539244 PNMA3Q9UL41 463 aa16.76■□□□□ 0.27
SS18-204ENST00000539244 FARP2O94887 1054 aaPredicted RBP16.75■□□□□ 0.27
SS18-204ENST00000539244 INHAP05111 366 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms