RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 CACNA1FO60840 1977 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 SEMA3EO15041 775 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 WDHD1O75717 1129 aaPredicted RBP8.9□□□□□ -0.98
LMO3-220ENST00000539232 CHGBP05060 677 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 ZAP70P43403 619 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 MMP14P50281 582 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 PDE3AQ14432 1141 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 ARHGEF6Q15052 776 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 SLFNL1Q499Z3 407 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 GORABQ5T7V8 394 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.9□□□□□ -0.98
LMO3-220ENST00000539232 MIGA2Q7L4E1 593 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 AACSQ86V21 672 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 RHPN1Q8TCX5 695 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 SYMPKQ92797 1274 aaKnown RBP8.9□□□□□ -0.98
LMO3-220ENST00000539232 EDC3Q96F86 508 aaKnown RBP8.9□□□□□ -0.98
LMO3-220ENST00000539232 CRBNQ96SW2 442 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 GPR108Q9NPR9 543 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 SUGT1Q9Y2Z0 365 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 A0A1B0GUL6 1792 aa8.9□□□□□ -0.98
LMO3-220ENST00000539232 SPTBN5Q9NRC6 3674 aaKnown RBP8.9□□□□□ -0.98
LMO3-220ENST00000539232 GAKO14976 1311 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 RPTORQ8N122 1335 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 ZBTB22O15209 634 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 MYO1BO43795 1136 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 RRP1P56182 461 aaKnown RBP8.89□□□□□ -0.99
LMO3-220ENST00000539232 RHBDL3P58872 404 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 SP3Q02447 781 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 MAP3K11Q16584 847 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 LRIT3Q3SXY7 679 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 SPRYD7Q5W111 196 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 UBE2Q1Q7Z7E8 422 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 IFNL1Q8IU54 200 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 NSUN4Q96CB9 384 aaKnown RBP8.89□□□□□ -0.99
LMO3-220ENST00000539232 ELP3Q9H9T3 547 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 DDX19BQ9UMR2 479 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 PIEZO1Q92508 2521 aa8.89□□□□□ -0.99
LMO3-220ENST00000539232 RFX7Q2KHR2 1363 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 DDTLA6NHG4 134 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 MANSC4A6NHS7 340 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 FAM196BA6NMK8 535 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 INPP5BP32019 993 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 BMP8BP34820 402 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 BTDP43251 543 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 RGS3P49796 1198 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 VGLL4Q14135 290 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 SUPT20HL1Q3ZLR7 823 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 TTC39AQ5SRH9 613 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 TSHZ3Q63HK5 1081 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 ARMC9Q7Z3E5 817 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 RPAP2Q8IXW5 612 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 NKX2-3Q8TAU0 364 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 OTUD7AQ8TE49 926 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 SH3RF3Q8TEJ3 882 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 ZKSCAN4Q969J2 545 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 SHISA4Q96DD7 197 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 SLC10A4Q96EP9 437 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 PTPN18Q99952 460 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 RAI14Q9P0K7 980 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.88□□□□□ -0.99
LMO3-220ENST00000539232 STAP2Q9UGK3 403 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 PPP2R3BQ9Y5P8 575 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 PTCH2Q9Y6C5 1203 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 CACNA1AO00555 2505 aa8.88□□□□□ -0.99
LMO3-220ENST00000539232 MROH7-TTC4A0A0A0MT08 1334 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 PDS5AQ29RF7 1337 aaKnown RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 LAMB1P07942 1786 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 GPR75-ASB3A0A0A6YYF3 556 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 IGF2BP3O00425 579 aaKnown RBP eCLIP8.87□□□□□ -0.99
LMO3-220ENST00000539232 MYCP01106 439 aaPredicted RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 MS4A1P11836 297 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 NF2P35240 595 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 DYNLL1P63167 89 aaKnown RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 JAG1P78504 1218 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 CAP1Q01518 475 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 EVX2Q03828 476 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 RRP1BQ14684 758 aaKnown RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 SHROOM1Q2M3G4 852 aaPredicted RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 CCDC84Q86UT8 332 aaPredicted RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 DZIP1Q86YF9 867 aaKnown RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.87□□□□□ -0.99
LMO3-220ENST00000539232 FAM163AQ96GL9 167 aaPredicted RBP8.87□□□□□ -0.99
LMO3-220ENST00000539232 WNK4Q96J92 1243 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 SNX27Q96L92 541 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 SNCAIPQ9Y6H5 919 aa8.87□□□□□ -0.99
LMO3-220ENST00000539232 ATRNL1Q5VV63 1379 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 MAST3O60307 1309 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 SYNGAP1Q96PV0 1343 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 UQCRFS1P1P0C7P4 283 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 MAP3K9P80192 1104 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 PICALMQ13492 652 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 FKBP1CQ5VVH2 108 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 FAM83AQ86UY5 434 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 FAM151AQ8WW52 585 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 MS4A4AQ96JQ5 239 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 ZNF512BQ96KM6 892 aaPredicted RBP8.86□□□□□ -0.99
LMO3-220ENST00000539232 LRP2BPQ9P2M1 347 aa8.86□□□□□ -0.99
LMO3-220ENST00000539232 PSME4Q14997 1843 aa8.85□□□□□ -0.99
LMO3-220ENST00000539232 PHF20L1A8MW92 1017 aa8.85□□□□□ -0.99
LMO3-220ENST00000539232 SMIM22K7EJ46 135 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms