RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TRIB2Q92519 343 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 NUDT12Q9BQG2 462 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 ATP11BQ9Y2G3 1177 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 XRCC5P13010 732 aaKnown RBP11.69□□□□□ -0.54
USP28-205ENST00000537706 ATN1P54259 1190 aaPredicted RBP11.69□□□□□ -0.54
USP28-205ENST00000537706 KSR2Q6VAB6 950 aa11.69□□□□□ -0.54
USP28-205ENST00000537706 CCAR1Q8IX12 1150 aaKnown RBP11.69□□□□□ -0.54
USP28-205ENST00000537706 ZNF576Q9H609 170 aa11.69□□□□□ -0.54
USP28-205ENST00000537706 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.68□□□□□ -0.54
USP28-205ENST00000537706 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.68□□□□□ -0.54
USP28-205ENST00000537706 H7C1W4 665 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 CSF1RP07333 972 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 PTPRAP18433 802 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 CHAF1AQ13111 956 aaPredicted RBP11.68□□□□□ -0.54
USP28-205ENST00000537706 BADQ92934 168 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 MYH16Q9H6N6 1097 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 CHMP3Q9Y3E7 222 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 AFG3L2Q9Y4W6 797 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 LRRFIP2Q9Y608 721 aaKnown RBP11.68□□□□□ -0.54
USP28-205ENST00000537706 MSCO60682 206 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 IGKV5-2P06315 115 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 UBE4AQ14139 1066 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 CNNM1Q9NRU3 951 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 SUGT1Q9Y2Z0 365 aa11.68□□□□□ -0.54
USP28-205ENST00000537706 UNC80Q8N2C7 3258 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 NEURL1BA8MQ27 555 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 DNAJB2P25686 324 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 CACNB2Q08289 660 aaPredicted RBP11.67□□□□□ -0.54
USP28-205ENST00000537706 NEUROD2Q15784 382 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 CCDC30Q5VVM6 783 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 LHX8Q68G74 356 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 HHIPL2Q6UWX4 724 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 TIFAQ96CG3 184 aa11.67□□□□□ -0.54
USP28-205ENST00000537706 CWC22Q9HCG8 908 aaKnown RBP11.67□□□□□ -0.54
USP28-205ENST00000537706 TRIM75PA6NK02 468 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 RGS2P41220 211 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 TCP10Q12799 353 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 PROCA1Q8NCQ7 364 aaPredicted RBP11.66□□□□□ -0.54
USP28-205ENST00000537706 SPINK5Q9NQ38 1064 aaPredicted RBP11.66□□□□□ -0.54
USP28-205ENST00000537706 TTC28Q96AY4 2481 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 PI4KAP2A4QPH2 592 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 DNM1LO00429 736 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 GYG1P46976 350 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 MRE11P49959 708 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 GCKRQ14397 625 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 CWF19L2Q2TBE0 894 aaKnown RBP11.66□□□□□ -0.54
USP28-205ENST00000537706 MFSD14CQ5VZR4 134 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 APOBEC3HQ6NTF7 200 aaKnown RBP11.66□□□□□ -0.54
USP28-205ENST00000537706 LDHAL6AQ6ZMR3 332 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 PI4KAP1Q8N8J0 262 aa11.66□□□□□ -0.54
USP28-205ENST00000537706 MYBBP1AQ9BQG0 1328 aaKnown RBP11.66□□□□□ -0.54
USP28-205ENST00000537706 CCND3P30281 292 aaPredicted RBP11.65□□□□□ -0.54
USP28-205ENST00000537706 CCDC57Q2TAC2 916 aa11.65□□□□□ -0.54
USP28-205ENST00000537706 CAVIN4Q5BKX8 364 aa11.65□□□□□ -0.54
USP28-205ENST00000537706 LAMA3Q16787 3333 aa11.65□□□□□ -0.54
USP28-205ENST00000537706 KBTBD13C9JR72 458 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 IGFBP4P22692 258 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 MAPK4P31152 587 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 CCDC85BQ15834 202 aaPredicted RBP11.64□□□□□ -0.55
USP28-205ENST00000537706 POTEEQ6S8J3 1075 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 ARRDC4Q8NCT1 418 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 LPAR1Q92633 364 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 FAM84BQ96KN1 310 aaPredicted RBP11.64□□□□□ -0.55
USP28-205ENST00000537706 TBC1D2Q9BYX2 928 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 CXXC1Q9P0U4 656 aaPredicted RBP11.64□□□□□ -0.55
USP28-205ENST00000537706 MYH3P11055 1940 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
USP28-205ENST00000537706 APBA2Q99767 749 aa11.64□□□□□ -0.55
USP28-205ENST00000537706 DDX20Q9UHI6 824 aaKnown RBP11.64□□□□□ -0.55
USP28-205ENST00000537706 GPR37L1O60883 481 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 CNGA1P29973 690 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 IRX3P78415 501 aaPredicted RBP11.63□□□□□ -0.55
USP28-205ENST00000537706 CCDC174Q6PII3 467 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 SLC39A5Q6ZMH5 540 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 CCDC129Q6ZRS4 1044 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 STK31Q9BXU1 1019 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 MORF4L1Q9UBU8 362 aa11.63□□□□□ -0.55
USP28-205ENST00000537706 TREML2Q5T2D2 321 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 GPRC5AQ8NFJ5 357 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 NECAB3Q96P71 396 aaPredicted RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 EPHX3Q9H6B9 360 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 MBIPQ9NS73 344 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 ELL2O00472 640 aaPredicted RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 GLRX3O76003 335 aaKnown RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 CALD1Q05682 793 aaKnown RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 GRIK5Q16478 980 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 ZSCAN29Q8IWY8 852 aaPredicted RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 ASCC2Q9H1I8 757 aaPredicted RBP11.62□□□□□ -0.55
USP28-205ENST00000537706 PRDM12Q9H4Q4 367 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 PDLIM7Q9NR12 457 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 TACC3Q9Y6A5 838 aa11.62□□□□□ -0.55
USP28-205ENST00000537706 PHF20L1A8MW92 1017 aa11.61□□□□□ -0.55
USP28-205ENST00000537706 BMP1P13497 986 aa11.61□□□□□ -0.55
USP28-205ENST00000537706 FPGSQ05932 587 aa11.61□□□□□ -0.55
USP28-205ENST00000537706 GTF3C2Q8WUA4 911 aaPredicted RBP11.61□□□□□ -0.55
USP28-205ENST00000537706 IQSEC3Q9UPP2 1182 aaPredicted RBP11.61□□□□□ -0.55
USP28-205ENST00000537706 MAST2Q6P0Q8 1798 aa11.61□□□□□ -0.55
USP28-205ENST00000537706 RAG1P15918 1043 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 TRIM60Q495X7 471 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms