RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 SLC52A2Q9HAB3 445 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 CD248Q9HCU0 757 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 L1RE1Q9UN81 338 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 PPP2R2CQ9Y2T4 447 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 MYOM1P52179 1685 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 PALLDQ8WX93 1383 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 SNUPNO95149 360 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 MSL1Q68DK7 614 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 DHX40Q8IX18 779 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 PHACTR3Q96KR7 559 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 ADGRB2O60241 1585 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 TCHHQ07283 1943 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 H3BQV1 296 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 IL13P35225 146 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 IFFO2Q5TF58 517 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 SNX14Q9Y5W7 946 aa12.35□□□□□ -0.43
CLSTN3-207ENST00000537408 ILDR2Q71H61 639 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CCDC26Q8TAB7 109 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 SDF4Q9BRK5 362 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 ANKRD33BA6NCL7 494 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CAND2O75155 1236 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 SNCBQ16143 134 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 SAAL1Q96ER3 474 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 NYXQ9GZU5 481 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 VIPAS39Q9H9C1 493 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 PUF60Q9UHX1 559 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 PXDNQ92626 1479 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 TOP1P11387 765 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 TTC14Q96N46 770 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 MBIPQ9NS73 344 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 RAB21Q9UL25 225 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 MED1Q15648 1581 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CTAGE15A4D2H0 777 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CTAGE8P0CG41 777 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 SLC8A1P32418 973 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 PPFIA1Q13136 1202 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CDC37L1Q7L3B6 337 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CTAGE6Q86UF2 777 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CCAR1Q8IX12 1150 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 CTAGE4Q8IX94 777 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 DHX58Q96C10 678 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 KLC4Q9NSK0 619 aa12.34□□□□□ -0.43
CLSTN3-207ENST00000537408 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 TBC1D8BQ0IIM8 1120 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 GRIK3Q13003 919 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 DZIP3Q86Y13 1208 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 FRMD3A2A2Y4 597 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 KIF5CO60282 957 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 SERPINC1P01008 464 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 SLC15A2Q16348 729 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 RNF187Q5TA31 235 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 MSANTD4Q8NCY6 345 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 ATXN2Q99700 1313 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 GOLGA6CA6NDK9 693 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 KCNQ2O43526 872 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 FSBPO95073 299 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 RHOXF2BP0C7M4 288 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 GOLGA6DP0CG33 693 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 ZKSCAN1P17029 563 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 CCNHP51946 323 aaPredicted RBP12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 ATP2B2Q01814 1243 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 FAM173BQ6P4H8 233 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 RHOXF2Q9BQY4 288 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 CAPS2Q9BXY5 557 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 GOLGA6AQ9NYA3 693 aa12.33□□□□□ -0.44
CLSTN3-207ENST00000537408 ANKRD18BA2A2Z9 1011 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 PLSCR1O15162 318 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 ECM2O94769 699 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 PRPHP41219 470 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 CCT4P50991 539 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 G3BP1Q13283 466 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 JAKMIP1Q96N16 626 aaKnown RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 BATF3Q9NR55 127 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 SOS1Q07889 1333 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 IGSF1Q8N6C5 1336 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 DNAJC10Q8IXB1 793 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 ZNF483Q8TF39 744 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 PLEKHF1Q96S99 279 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 ZNF219Q9P2Y4 722 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 H0YIN7 160 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 MYO1FO00160 1098 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 NDUFAB1O14561 156 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 SLC8A3P57103 927 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 PSMD2Q13200 908 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 ZNF790Q6PG37 636 aa12.32□□□□□ -0.44
CLSTN3-207ENST00000537408 MYBL2P10244 700 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 PEX19P40855 299 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 CCDC148Q8NFR7 591 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 BCS1LQ9Y276 419 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 CUTAO60888 179 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 NAP1L1P55209 391 aaKnown RBP12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 ANKRD1Q15327 319 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 WLSQ5T9L3 541 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 RCSD1Q6JBY9 416 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 RUFY2Q8WXA3 655 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 CDC23Q9UJX2 597 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 WWC3Q9ULE0 1092 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 ADRA2BP18089 450 aa12.31□□□□□ -0.44
CLSTN3-207ENST00000537408 STIM1Q13586 685 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms