RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MYH6P13533 1939 aa15.23■□□□□ 0.03
LDLR-203ENST00000535915 LAMB2P55268 1798 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 CAMTA2O94983 1202 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 SSRP1Q08945 709 aaKnown RBP15.22■□□□□ 0.03
LDLR-203ENST00000535915 STK11IPQ8N1F8 1099 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 LCORLQ8N3X6 602 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 JMYQ8N9B5 988 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 TACC3Q9Y6A5 838 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 NEMFO60524 1076 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 LRP2BPQ9P2M1 347 aa15.22■□□□□ 0.03
LDLR-203ENST00000535915 COL22A1Q8NFW1 1626 aaPredicted RBP15.22■□□□□ 0.03
LDLR-203ENST00000535915 LOC102724428A0A0B4J2F2 783 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 UBE2Q2LH0YL09 131 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 PPP6R2O75170 966 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 GNAT2P19087 354 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 SYKP43405 635 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 SIK1P57059 783 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 NLRP12P59046 1061 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 RBM6P78332 1123 aaKnown RBP15.21■□□□□ 0.03
LDLR-203ENST00000535915 TPD52L1Q16890 204 aaPredicted RBP15.21■□□□□ 0.03
LDLR-203ENST00000535915 SMAP1Q8IYB5 467 aaPredicted RBP15.21■□□□□ 0.03
LDLR-203ENST00000535915 MIGA1Q8NAN2 632 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 BPIFA3Q9BQP9 254 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 ZKSCAN3Q9BRR0 538 aa15.21■□□□□ 0.03
LDLR-203ENST00000535915 U2AF2P26368 475 aaKnown RBP eCLIP15.21■□□□□ 0.033e-6■■■□□ 15.4
LDLR-203ENST00000535915 CDCA7Q9BWT1 371 aaPredicted RBP15.21■□□□□ 0.03
LDLR-203ENST00000535915 NTSR2O95665 410 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 TNNT1P13805 278 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 CHRNDQ07001 517 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 SART3Q15020 963 aaKnown RBP15.2■□□□□ 0.02
LDLR-203ENST00000535915 PTPAQ15257 358 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.2■□□□□ 0.02
LDLR-203ENST00000535915 PNPLA7Q6ZV29 1317 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 STK36Q9NRP7 1315 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 TAF1P21675 1872 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 FMNL1O95466 1100 aaPredicted RBP15.2■□□□□ 0.02
LDLR-203ENST00000535915 ITPK1Q13572 414 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 ISM2Q6H9L7 571 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 SHC4Q6S5L8 630 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 STAG1Q8WVM7 1258 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 MAP3K14Q99558 947 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 IQSEC3Q9UPP2 1182 aaPredicted RBP15.2■□□□□ 0.02
LDLR-203ENST00000535915 RREB1Q92766 1687 aa15.2■□□□□ 0.02
LDLR-203ENST00000535915 ERICH2A1L162 156 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 ADAMTS2O95450 1211 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 SKILP12757 684 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 TPM4P67936 248 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 WTAPQ15007 396 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 ZNF710Q8N1W2 664 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 WASF1Q92558 559 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 TIGD1Q96MW7 591 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 BCL2L12Q9HB09 334 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 IFNAR1P17181 557 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 CLIC6Q96NY7 704 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 ZHX1Q9UKY1 873 aaPredicted RBP15.19■□□□□ 0.02
LDLR-203ENST00000535915 MYH2Q9UKX2 1941 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 SPATA31A1Q5TZJ5 1347 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 SMC2O95347 1197 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 TRIM22Q8IYM9 498 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 HPSEQ9Y251 543 aa15.19■□□□□ 0.02
LDLR-203ENST00000535915 CASZ1Q86V15 1759 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 RTL9Q8NET4 1388 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 CYP7A1P22680 504 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 RTN1Q16799 776 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 NBPF11Q86T75 865 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 CCDC82Q8N4S0 544 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 IFNKQ9P0W0 207 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 ABCF2Q9UG63 623 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 BAZ2AQ9UIF9 1905 aaKnown RBP15.18■□□□□ 0.02
LDLR-203ENST00000535915 SMTNL1A8MU46 457 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 GUCY1A2P33402 732 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 SAFBQ15424 915 aaKnown RBP eCLIP15.18■□□□□ 0.02
LDLR-203ENST00000535915 RESP18Q5W5W9 173 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 MARCH10Q8NA82 808 aaPredicted RBP15.18■□□□□ 0.02
LDLR-203ENST00000535915 XPO4Q9C0E2 1151 aaKnown RBP15.18■□□□□ 0.02
LDLR-203ENST00000535915 PRDM10Q9NQV6 1147 aa15.18■□□□□ 0.02
LDLR-203ENST00000535915 A0A1B0GUL6 1792 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 COL4A1P02462 1669 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 GSDMDP57764 484 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 NOSTRINQ8IVI9 506 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 CDC5LQ99459 802 aaKnown RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 RNF41Q9H4P4 317 aaPredicted RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 BTBD18B2RXH4 712 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 CUTAO60888 179 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 MMP1P03956 469 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 CCZ1BP86790 482 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 CCZ1P86791 482 aaPredicted RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 CMTR1Q8N1G2 835 aaKnown RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 IMPACTQ9P2X3 320 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 KCNJ14Q9UNX9 436 aa15.17■□□□□ 0.02
LDLR-203ENST00000535915 THRAP3Q9Y2W1 955 aaKnown RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 AHDC1Q5TGY3 1603 aaPredicted RBP15.17■□□□□ 0.02
LDLR-203ENST00000535915 NRAPQ86VF7 1730 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 NID2Q14112 1375 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 MINDY4BA8MYZ0 360 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 PPARAQ07869 468 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 PNOCQ13519 176 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 ADGRA1Q86SQ6 560 aa15.16■□□□□ 0.02
LDLR-203ENST00000535915 DIS3L2Q8IYB7 885 aaKnown RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms