RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MIGA2Q7L4E1 593 aa24.09■■□□□ 1.45
CPSF1-209ENST00000532725 MIGA1Q8NAN2 632 aa24.09■■□□□ 1.45
CPSF1-209ENST00000532725 DDTLA6NHG4 134 aaPredicted RBP24.08■■□□□ 1.45
CPSF1-209ENST00000532725 MAP3K9P80192 1104 aa24.08■■□□□ 1.45
CPSF1-209ENST00000532725 NUCB1Q02818 461 aa24.08■■□□□ 1.45
CPSF1-209ENST00000532725 SLC10A4Q96EP9 437 aa24.08■■□□□ 1.45
CPSF1-209ENST00000532725 CLMNQ96JQ2 1002 aa24.08■■□□□ 1.45
CPSF1-209ENST00000532725 STAP2Q9UGK3 403 aa24.08■■□□□ 1.45
CPSF1-209ENST00000532725 ZNF532Q9HCE3 1301 aa24.08■■□□□ 1.44
CPSF1-209ENST00000532725 DOCK2Q92608 1830 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 ERC2O15083 957 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 MAP3K10Q02779 954 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 DCAF15Q66K64 600 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.07■■□□□ 1.44
CPSF1-209ENST00000532725 ANKRD13AQ8IZ07 590 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.07■■□□□ 1.44
CPSF1-209ENST00000532725 TGFBRAP1Q8WUH2 860 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 RIOK1Q9BRS2 568 aaKnown RBP24.07■■□□□ 1.44
CPSF1-209ENST00000532725 LNPKQ9C0E8 428 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 WBP1LQ9NX94 342 aa24.07■■□□□ 1.44
CPSF1-209ENST00000532725 GLRX3O76003 335 aaKnown RBP24.06■■□□□ 1.44
CPSF1-209ENST00000532725 ADD2P35612 726 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 KIF23Q02241 960 aaPredicted RBP24.06■■□□□ 1.44
CPSF1-209ENST00000532725 CHD1LQ86WJ1 897 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 CERS3Q8IU89 383 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 CSRNP1Q96S65 589 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.06■■□□□ 1.443e-11■■■■■ 33.7
CPSF1-209ENST00000532725 OSBPL5Q9H0X9 879 aaPredicted RBP24.06■■□□□ 1.44
CPSF1-209ENST00000532725 ZNF112Q9UJU3 913 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 MAST2Q6P0Q8 1798 aa24.06■■□□□ 1.44
CPSF1-209ENST00000532725 PDE1AP54750 535 aa24.05■■□□□ 1.44
CPSF1-209ENST00000532725 MAP2K1Q02750 393 aaPredicted RBP24.05■■□□□ 1.44
CPSF1-209ENST00000532725 SLFNL1Q499Z3 407 aa24.05■■□□□ 1.44
CPSF1-209ENST00000532725 ZSCAN29Q8IWY8 852 aaPredicted RBP24.05■■□□□ 1.44
CPSF1-209ENST00000532725 ZNF341Q9BYN7 854 aa24.05■■□□□ 1.44
CPSF1-209ENST00000532725 ATRNL1Q5VV63 1379 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 MAGEB6P1A0A0J9YX57 407 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 CHGBP05060 677 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 UBE3CQ15386 1083 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 SPRYD7Q5W111 196 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 KBTBD3Q8NAB2 608 aa24.04■■□□□ 1.44
CPSF1-209ENST00000532725 HSPA1AP0DMV8 641 aaKnown RBP24.03■■□□□ 1.44
CPSF1-209ENST00000532725 HSPA1BP0DMV9 641 aaKnown RBP24.03■■□□□ 1.44
CPSF1-209ENST00000532725 MAPKAPK5Q8IW41 473 aa24.03■■□□□ 1.44
CPSF1-209ENST00000532725 AK9Q5TCS8 1911 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 TBC1D12O60347 775 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 SLURP2P0DP57 97 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 VGLL4Q14135 290 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 ZSCAN25Q6NSZ9 544 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 ZKSCAN4Q969J2 545 aaPredicted RBP24.02■■□□□ 1.44
CPSF1-209ENST00000532725 WRNIP1Q96S55 665 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 FLT1P17948 1338 aa24.02■■□□□ 1.44
CPSF1-209ENST00000532725 PHF20L1A8MW92 1017 aa24.01■■□□□ 1.43
CPSF1-209ENST00000532725 WNK4Q96J92 1243 aa24.01■■□□□ 1.43
CPSF1-209ENST00000532725 DHX36Q9H2U1 1008 aaKnown RBP24.01■■□□□ 1.43
CPSF1-209ENST00000532725 ELP3Q9H9T3 547 aa24.01■■□□□ 1.43
CPSF1-209ENST00000532725 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.01■■□□□ 1.43
CPSF1-209ENST00000532725 THSD7BQ9C0I4 1608 aa24.01■■□□□ 1.43
CPSF1-209ENST00000532725 COL2A1P02458 1487 aaPredicted RBP24■■□□□ 1.43
CPSF1-209ENST00000532725 INPP5BP32019 993 aa24■■□□□ 1.43
CPSF1-209ENST00000532725 GJA5P36382 358 aa24■■□□□ 1.43
CPSF1-209ENST00000532725 MKRN3Q13064 507 aaKnown RBP24■■□□□ 1.43
CPSF1-209ENST00000532725 PLEKHM2Q8IWE5 1019 aa24■■□□□ 1.43
CPSF1-209ENST00000532725 REM2Q8IYK8 340 aaPredicted RBP24■■□□□ 1.43
CPSF1-209ENST00000532725 PI4KBQ9UBF8 816 aa24■■□□□ 1.43
CPSF1-209ENST00000532725 CSADQ9Y600 493 aa24■■□□□ 1.43
CPSF1-209ENST00000532725 ZBTB48P10074 688 aaPredicted RBP23.99■■□□□ 1.43
CPSF1-209ENST00000532725 LCORLQ8N3X6 602 aa23.99■■□□□ 1.43
CPSF1-209ENST00000532725 PALD1Q9ULE6 856 aa23.99■■□□□ 1.43
CPSF1-209ENST00000532725 SNCAIPQ9Y6H5 919 aa23.99■■□□□ 1.43
CPSF1-209ENST00000532725 RNF113AO15541 343 aaKnown RBP23.98■■□□□ 1.43
CPSF1-209ENST00000532725 USP5P45974 858 aa23.98■■□□□ 1.43
CPSF1-209ENST00000532725 TM4SF4P48230 202 aa23.98■■□□□ 1.43
CPSF1-209ENST00000532725 CNKSR2Q8WXI2 1034 aa23.98■■□□□ 1.43
CPSF1-209ENST00000532725 PUS7LQ9H0K6 701 aaKnown RBP23.98■■□□□ 1.43
CPSF1-209ENST00000532725 OSBPL3Q9H4L5 887 aa23.98■■□□□ 1.43
CPSF1-209ENST00000532725 ARMT1Q9H993 441 aa23.98■■□□□ 1.43
CPSF1-209ENST00000532725 METTL16Q86W50 562 aaKnown RBP23.97■■□□□ 1.43
CPSF1-209ENST00000532725 FOXP4Q8IVH2 680 aaPredicted RBP23.97■■□□□ 1.43
CPSF1-209ENST00000532725 OPTNQ96CV9 577 aa23.97■■□□□ 1.43
CPSF1-209ENST00000532725 CRNKL1Q9BZJ0 848 aaKnown RBP23.97■■□□□ 1.43
CPSF1-209ENST00000532725 SAP30BPQ9UHR5 308 aaKnown RBP23.97■■□□□ 1.43
CPSF1-209ENST00000532725 FOXN1O15353 648 aa23.96■■□□□ 1.43
CPSF1-209ENST00000532725 MBD4O95243 580 aa23.96■■□□□ 1.43
CPSF1-209ENST00000532725 ZFYP08048 801 aaPredicted RBP23.96■■□□□ 1.43
CPSF1-209ENST00000532725 NOL9Q5SY16 702 aaKnown RBP23.96■■□□□ 1.43
CPSF1-209ENST00000532725 ERO1BQ86YB8 467 aa23.96■■□□□ 1.43
CPSF1-209ENST00000532725 AIDAQ96BJ3 306 aa23.96■■□□□ 1.43
CPSF1-209ENST00000532725 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.96■■□□□ 1.43
CPSF1-209ENST00000532725 SPDYE5A6NIY4 337 aa23.95■■□□□ 1.42
CPSF1-209ENST00000532725 OSBP2Q969R2 916 aa23.95■■□□□ 1.42
CPSF1-209ENST00000532725 EVI5LQ96CN4 794 aa23.95■■□□□ 1.42
CPSF1-209ENST00000532725 BEGAINQ9BUH8 593 aa23.95■■□□□ 1.42
CPSF1-209ENST00000532725 HERC5Q9UII4 1024 aaKnown RBP23.95■■□□□ 1.42
CPSF1-209ENST00000532725 CDK5RAP2Q96SN8 1893 aa23.95■■□□□ 1.42
CPSF1-209ENST00000532725 OTOFQ9HC10 1997 aa23.94■■□□□ 1.42
CPSF1-209ENST00000532725 FAM196BA6NMK8 535 aa23.94■■□□□ 1.42
CPSF1-209ENST00000532725 PRKAB2O43741 272 aa23.94■■□□□ 1.42
CPSF1-209ENST00000532725 CTNND1O60716 968 aaKnown RBP23.94■■□□□ 1.42
CPSF1-209ENST00000532725 LRRFIP1Q32MZ4 808 aaKnown RBP23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms