RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ACTL7BQ9Y614 415 aa6.32□□□□□ -1.4
CD44-233ENST00000531141 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.31□□□□□ -1.4
CD44-233ENST00000531141 BPNT1O95861 308 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 PF4P02776 101 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 DRD2P14416 443 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 EIF4A3P38919 411 aaKnown RBP6.31□□□□□ -1.4
CD44-233ENST00000531141 WIPI1Q5MNZ9 446 aaPredicted RBP6.31□□□□□ -1.4
CD44-233ENST00000531141 DYMQ7RTS9 669 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 ARMC10Q8N2F6 343 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 TP53INP1Q96A56 240 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 ELMO3Q96BJ8 720 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 IGSF5Q9NSI5 407 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 PPP1R9AQ9ULJ8 1098 aa6.31□□□□□ -1.4
CD44-233ENST00000531141 SUPT16HQ9Y5B9 1047 aaKnown RBP6.31□□□□□ -1.4
CD44-233ENST00000531141 DHX15O43143 795 aaKnown RBP6.3□□□□□ -1.4
CD44-233ENST00000531141 GARTP22102 1010 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 RPL6Q02878 288 aaKnown RBP6.3□□□□□ -1.4
CD44-233ENST00000531141 FAM160A1Q05DH4 1040 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 PTPN11Q06124 597 aaPredicted RBP6.3□□□□□ -1.4
CD44-233ENST00000531141 ZNF394Q53GI3 561 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 LRFN4Q6PJG9 635 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 HDXQ7Z353 690 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 KIAA0825Q8IV33 1275 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 FAM20CQ8IXL6 584 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 GATAD2BQ8WXI9 593 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 FANCD2OSQ96PS1 177 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 LRRC3Q9BY71 257 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 PIDD1Q9HB75 910 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 ADAMTS1Q9UHI8 967 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 DDX41Q9UJV9 622 aaKnown RBP6.3□□□□□ -1.4
CD44-233ENST00000531141 PCDHGB7Q9Y5F8 929 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 TACC3Q9Y6A5 838 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 SNCAIPQ9Y6H5 919 aa6.3□□□□□ -1.4
CD44-233ENST00000531141 MINDY4BA8MYZ0 360 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 CILPO75339 1184 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 F13A1P00488 732 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 H2AFB1P0C5Y9 115 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 H2AFB2P0C5Z0 115 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 BMP3P12645 472 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 ASPAP45381 313 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 USP11P51784 963 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 SGO2Q562F6 1265 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.29□□□□□ -1.4
CD44-233ENST00000531141 BNC2Q6ZN30 1099 aaPredicted RBP6.29□□□□□ -1.4
CD44-233ENST00000531141 FAM196AQ6ZSG2 479 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 ZNF654Q8IZM8 581 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 GOLM1Q8NBJ4 401 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 PLPPR2Q96GM1 343 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 TGIF2Q9GZN2 237 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 CCSER2Q9H7U1 834 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 FAM105AQ9NUU6 356 aa6.29□□□□□ -1.4
CD44-233ENST00000531141 FAM221AA4D161 298 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 DCDC2CA8MYV0 355 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 FANCGO15287 622 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 RAB6AP20340 208 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 MPP2Q14168 576 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 PRR23CQ6ZRP0 262 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 CYFIP1Q7L576 1253 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 RNF214Q8ND24 703 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 EZH1Q92800 747 aaPredicted RBP6.28□□□□□ -1.4
CD44-233ENST00000531141 SPON2Q9BUD6 331 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 ACSS3Q9H6R3 686 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 PICK1Q9NRD5 415 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 DISC1Q9NRI5 854 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 RAXQ9Y2V3 346 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 ROBO2Q9HCK4 1378 aa6.28□□□□□ -1.4
CD44-233ENST00000531141 PRAMEF27A3QJZ7 478 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 GREM1O60565 184 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 NEFMP07197 916 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 MAP4P27816 1152 aaKnown RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 RXRBP28702 533 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 ERCC5P28715 1186 aaPredicted RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 RING1Q06587 406 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 RAD51AP2Q09MP3 1159 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 DOC2BQ14184 412 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 INPP5AQ14642 412 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 TTLL4Q14679 1199 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 CWF19L2Q2TBE0 894 aaKnown RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 ZBTB37Q5TC79 503 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 C9orf131Q5VYM1 1079 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 CDPF1Q6NVV7 123 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 FBXL19Q6PCT2 694 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 NPM2Q86SE8 214 aaKnown RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 ZNF296Q8WUU4 475 aaPredicted RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 JARID2Q92833 1246 aaPredicted RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 KCNF1Q9H3M0 494 aa6.27□□□□□ -1.41
CD44-233ENST00000531141 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.27□□□□□ -1.41
CD44-233ENST00000531141 HCLS1P14317 486 aaPredicted RBP6.26□□□□□ -1.41
CD44-233ENST00000531141 NTF4P34130 210 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 RACK1P63244 317 aaKnown RBP6.26□□□□□ -1.41
CD44-233ENST00000531141 APOBRQ0VD83 1088 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 MAP7Q14244 749 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 PPM1JQ5JR12 505 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 NKAPLQ5M9Q1 402 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 BEND4Q6ZU67 534 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 REC114Q7Z4M0 266 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 CLEC10AQ8IUN9 316 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 KCT2Q8NC54 265 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 FBLIM1Q8WUP2 373 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 NT5C1AQ9BXI3 368 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms