RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 TFIP11Q9UBB9 837 aaKnown RBP17.22■□□□□ 0.35
ECHDC1-220ENST00000528402 GOLGA8AA7E2F4 631 aa17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 POLRMTO00411 1230 aaKnown RBP17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 BAG3O95817 575 aa17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 ADD1P35611 737 aaKnown RBP17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 IARSP41252 1262 aaKnown RBP17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 DZIP1Q86YF9 867 aaKnown RBP17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 UBAC1Q9BSL1 405 aa17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 ARPP21Q9UBL0 812 aaPredicted RBP17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 GGA1Q9UJY5 639 aa17.21■□□□□ 0.35
ECHDC1-220ENST00000528402 WTIPA6NIX2 430 aaPredicted RBP17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 MINDY4BA8MYZ0 360 aa17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 LDHBP07195 334 aaKnown RBP17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 IFNAR1P17181 557 aa17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 KLRK1P26718 216 aa17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 SSRP1Q08945 709 aaKnown RBP17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 CHAF1AQ13111 956 aaPredicted RBP17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 NOL10Q9BSC4 688 aaKnown RBP17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 TOMM22Q9NS69 142 aa17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 RTEL1Q9NZ71 1219 aa17.21■□□□□ 0.34
ECHDC1-220ENST00000528402 ORC4O43929 436 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 DTNBO60941 627 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 CALM1P0DP23 149 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 CALM2P0DP24 149 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 CALM3P0DP25 149 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 IL1R1P14778 569 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 PPP4CP60510 307 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 TRIM29Q14134 588 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 RRP12Q5JTH9 1297 aaKnown RBP17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 FAM173BQ6P4H8 233 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 IQCA1Q86XH1 822 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 SLF2Q8IX21 1173 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 SP8Q8IXZ3 490 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 TRIM22Q8IYM9 498 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 PROM2Q8N271 834 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 TBC1D22AQ8WUA7 517 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 SDR42E1Q8WUS8 393 aa17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 TRIM44Q96DX7 344 aaPredicted RBP17.2■□□□□ 0.34
ECHDC1-220ENST00000528402 YEATS4O95619 227 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 DYNLL1P63167 89 aaKnown RBP17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 GPSM2P81274 684 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 NTRK3Q16288 839 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 CCDC178Q5BJE1 867 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 CTR9Q6PD62 1173 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 TXNRD3Q86VQ6 643 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 FAM43AQ8N2R8 423 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 ZNF384Q8TF68 577 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 AKT1S1Q96B36 256 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 ALG1Q9BT22 464 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 NUP62CLQ9H1M0 184 aa17.19■□□□□ 0.34
ECHDC1-220ENST00000528402 CTAGE5O15320 804 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 FMNL1O95466 1100 aaPredicted RBP17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 CCDC192P0DO97 292 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 PDE4BQ07343 736 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 RTN1Q16799 776 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 HS1BP3Q53T59 392 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 MICU3Q86XE3 530 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 AMOTL1Q8IY63 956 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 CD209Q9NNX6 404 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 DCP1AQ9NPI6 582 aaPredicted RBP17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 POLR3EQ9NVU0 708 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 TACC3Q9Y6A5 838 aa17.18■□□□□ 0.34
ECHDC1-220ENST00000528402 UFL1O94874 794 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 PLCG2P16885 1265 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 PRDX5P30044 214 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 ALDH1B1P30837 517 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 DDR1Q08345 913 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 SEC23AQ15436 765 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 MAP3K11Q16584 847 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 BICD2Q8TD16 824 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 KCNG4Q8TDN1 519 aa17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 ZSCAN10Q96SZ4 725 aaPredicted RBP17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 FAM217BQ9NTX9 383 aaPredicted RBP17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 RBM28Q9NW13 759 aaKnown RBP17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 AATFQ9NY61 560 aaKnown RBP eCLIP17.17■□□□□ 0.34
ECHDC1-220ENST00000528402 NRXN2Q9P2S2 1712 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 A0A1W2PQ27 194 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 A0A1W2PQ64 194 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 A0A1W2PQD8 194 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 USP17L12C9JPN9 530 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 USP17L21D6R901 530 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 CAVIN2O95810 425 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 APBA3O96018 575 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 CDC27P30260 824 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 PDE6BP35913 854 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 FANCBQ8NB91 859 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 FAM163AQ96GL9 167 aaPredicted RBP17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 PGBD1Q96JS3 809 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 INCENPQ9NQS7 918 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 SUGT1Q9Y2Z0 365 aa17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 BAZ2AQ9UIF9 1905 aaKnown RBP17.16■□□□□ 0.34
ECHDC1-220ENST00000528402 LAMB1P07942 1786 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 DEXIO95424 95 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 NPR1P16066 1061 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 RXRBP28702 533 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 KIF23Q02241 960 aaPredicted RBP17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 MYSM1Q5VVJ2 828 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 RBM43Q6ZSC3 357 aaKnown RBP17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 CATIPQ7Z7H3 387 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms