RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 BICC1Q9H694 974 aaKnown RBP13.15□□□□□ -0.3
CPSF1-203ENST00000527916 PAK6Q9NQU5 681 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-203ENST00000527916 SMC4Q9NTJ3 1288 aa13.15□□□□□ -0.3
CPSF1-203ENST00000527916 TCP10Q12799 353 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 LRIT3Q3SXY7 679 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 GPAT2Q6NUI2 795 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 C7orf61Q8IZ16 206 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 ANKRD44Q8N8A2 993 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 ANKLE1Q8NAG6 615 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 SMCR8Q8TEV9 937 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-203ENST00000527916 COA7Q96BR5 231 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 PUS3Q9BZE2 481 aaKnown RBP13.14□□□□□ -0.31
CPSF1-203ENST00000527916 PICK1Q9NRD5 415 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 TAOK2Q9UL54 1235 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 SLC45A1Q9Y2W3 748 aa13.14□□□□□ -0.31
CPSF1-203ENST00000527916 METTL24Q5JXM2 366 aa13.13□□□□□ -0.31
CPSF1-203ENST00000527916 ARHGAP45Q92619 1136 aa13.13□□□□□ -0.31
CPSF1-203ENST00000527916 HDAC5Q9UQL6 1122 aa13.13□□□□□ -0.31
CPSF1-203ENST00000527916 A0A0G2JLL6 359 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-203ENST00000527916 GADL1Q6ZQY3 521 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 Q7L0L9 218 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 PRRT2Q7Z6L0 340 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-203ENST00000527916 TDHQ8IZJ6 230 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 WDR66Q8TBY9 1149 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 API5Q9BZZ5 524 aaKnown RBP13.12□□□□□ -0.31
CPSF1-203ENST00000527916 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 MTMR10Q9NXD2 777 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 ZMYND8Q9ULU4 1186 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-203ENST00000527916 NOB1Q9ULX3 412 aaKnown RBP13.12□□□□□ -0.31
CPSF1-203ENST00000527916 ZHX2Q9Y6X8 837 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 VCANP13611 3396 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 DOCK3Q8IZD9 2030 aa13.12□□□□□ -0.31
CPSF1-203ENST00000527916 PDE8BO95263 885 aa13.11□□□□□ -0.31
CPSF1-203ENST00000527916 IFIT1P09914 478 aaKnown RBP13.11□□□□□ -0.31
CPSF1-203ENST00000527916 RARSP54136 660 aaKnown RBP13.11□□□□□ -0.31
CPSF1-203ENST00000527916 SCYL3Q8IZE3 742 aa13.11□□□□□ -0.31
CPSF1-203ENST00000527916 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.11□□□□□ -0.312e-6■■□□□ 11.7
CPSF1-203ENST00000527916 ALPK3Q96L96 1907 aa13.1□□□□□ -0.31
CPSF1-203ENST00000527916 MAGEA10P43363 369 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-203ENST00000527916 CDC42EP5Q6NZY7 148 aa13.1□□□□□ -0.31
CPSF1-203ENST00000527916 DIS3LQ8TF46 1054 aaKnown RBP13.1□□□□□ -0.31
CPSF1-203ENST00000527916 COL25A1Q9BXS0 654 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-203ENST00000527916 UBE2OQ9C0C9 1292 aaKnown RBP13.1□□□□□ -0.31
CPSF1-203ENST00000527916 FBXO3Q9UK99 471 aa13.1□□□□□ -0.31
CPSF1-203ENST00000527916 DNAH12Q6ZR08 3092 aa13.1□□□□□ -0.31
CPSF1-203ENST00000527916 KIF16BQ96L93 1317 aa13.1□□□□□ -0.31
CPSF1-203ENST00000527916 HMGCRP04035 888 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 PTPRAP18433 802 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 RFX5P48382 616 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 NFIAQ12857 509 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 PUM3Q15397 648 aaKnown RBP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 LRRC24Q50LG9 513 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 DIEXFQ68CQ4 756 aaKnown RBP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 VGLL2Q8N8G2 317 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 C11orf49Q9H6J7 331 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 HMX1Q9NP08 348 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 USP40Q9NVE5 1235 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 PNMA3Q9UL41 463 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 DAGLAQ9Y4D2 1042 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 AFG3L2Q9Y4W6 797 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 LRRFIP2Q9Y608 721 aaKnown RBP13.09□□□□□ -0.31
CPSF1-203ENST00000527916 RPTORQ8N122 1335 aa13.09□□□□□ -0.31
CPSF1-203ENST00000527916 PRUNE2Q8WUY3 3088 aa13.08□□□□□ -0.32
CPSF1-203ENST00000527916 UBTFL1P0CB47 393 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-203ENST00000527916 SYN1P17600 705 aa13.08□□□□□ -0.32
CPSF1-203ENST00000527916 FAM110CQ1W6H9 321 aa13.08□□□□□ -0.32
CPSF1-203ENST00000527916 ANKRD13CQ8N6S4 541 aa13.08□□□□□ -0.32
CPSF1-203ENST00000527916 FAM198AQ9UFP1 575 aa13.08□□□□□ -0.32
CPSF1-203ENST00000527916 PHF20L1A8MW92 1017 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 EYA2O00167 538 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 IPO8O15397 1037 aaKnown RBP13.07□□□□□ -0.32
CPSF1-203ENST00000527916 FGFR2P21802 821 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 DIXDC1Q155Q3 683 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 ZSCAN29Q8IWY8 852 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-203ENST00000527916 MIER1Q8N108 512 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 AGTPBP1Q9UPW5 1226 aa13.07□□□□□ -0.32
CPSF1-203ENST00000527916 TRIM75PA6NK02 468 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 CTNND1O60716 968 aaKnown RBP13.06□□□□□ -0.32
CPSF1-203ENST00000527916 ENTPD3O75355 529 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 CIAO1O76071 339 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 LDHBP07195 334 aaKnown RBP13.06□□□□□ -0.32
CPSF1-203ENST00000527916 SLC5A1P13866 664 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 GCLCP48506 637 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-203ENST00000527916 KLHDC4Q8TBB5 520 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 GNL3LQ9NVN8 582 aaKnown RBP13.06□□□□□ -0.32
CPSF1-203ENST00000527916 EYSQ5T1H1 3165 aa13.06□□□□□ -0.32
CPSF1-203ENST00000527916 MYH13Q9UKX3 1938 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 GNAI3P08754 354 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 PABPC4Q13310 644 aaKnown RBP eCLIP13.05□□□□□ -0.32
CPSF1-203ENST00000527916 ATG9AQ7Z3C6 839 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 LPIN2Q92539 896 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 OGDHLQ9ULD0 1010 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 TTC28Q96AY4 2481 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 PTPRFP10586 1907 aa13.05□□□□□ -0.32
CPSF1-203ENST00000527916 ZBTB22O15209 634 aa13.04□□□□□ -0.32
CPSF1-203ENST00000527916 PRDX5P30044 214 aa13.04□□□□□ -0.32
CPSF1-203ENST00000527916 RGS3P49796 1198 aa13.04□□□□□ -0.32
CPSF1-203ENST00000527916 FAM109BQ6ICB4 259 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-203ENST00000527916 ZFPM1Q8IX07 1006 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms