RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PIDD1Q9HB75 910 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 LGR6Q9HBX8 967 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 SPG7Q9UQ90 795 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 CCDC180Q9P1Z9 1646 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 FBXO24O75426 580 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 PRNPP04156 253 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 LDHBP07195 334 aaKnown RBP6.53□□□□□ -1.36
CD44-219ENST00000525685 BMP6P22004 513 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 FGD1P98174 961 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 OGFOD3Q6PK18 319 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 MPRIPQ6WCQ1 1025 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 SMYD4Q8IYR2 804 aaPredicted RBP6.53□□□□□ -1.36
CD44-219ENST00000525685 GRIN3AQ8TCU5 1115 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 GPBAR1Q8TDU6 330 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 CBX8Q9HC52 389 aa6.53□□□□□ -1.36
CD44-219ENST00000525685 NEFMP07197 916 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 USP17L7P0C7H9 530 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 HCLS1P14317 486 aaPredicted RBP6.52□□□□□ -1.37
CD44-219ENST00000525685 ZNF326Q5BKZ1 582 aaKnown RBP6.52□□□□□ -1.37
CD44-219ENST00000525685 MCTP1Q6DN14 999 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 DNAJC14Q6Y2X3 702 aaPredicted RBP6.52□□□□□ -1.37
CD44-219ENST00000525685 NFXL1Q6ZNB6 911 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 FAM8A1Q9UBU6 413 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 CCDC39Q9UFE4 941 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 SAMM50Q9Y512 469 aa6.52□□□□□ -1.37
CD44-219ENST00000525685 COL17A1Q9UMD9 1497 aaPredicted RBP6.52□□□□□ -1.37
CD44-219ENST00000525685 RNGTTO60942 597 aaKnown RBP6.51□□□□□ -1.37
CD44-219ENST00000525685 ERVK-24P63145 666 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 CDK5R2Q13319 367 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 COL19A1Q14993 1142 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 RASIP1Q5U651 963 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 GIPC2Q8TF65 315 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 FRMD6Q96NE9 622 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 LRRC4CQ9HCJ2 640 aa6.51□□□□□ -1.37
CD44-219ENST00000525685 ZC3H7BQ9UGR2 993 aaKnown RBP6.51□□□□□ -1.37
CD44-219ENST00000525685 TRIM37O94972 964 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 CELA3AP09093 270 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 GNA15P30679 374 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 IRAK1P51617 712 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 XPCQ01831 940 aaPredicted RBP6.5□□□□□ -1.37
CD44-219ENST00000525685 VSIG10LQ86VR7 867 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 RNF214Q8ND24 703 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 ISL2Q96A47 359 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 ACSBG1Q96GR2 724 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 BSDC1Q9NW68 430 aaPredicted RBP6.5□□□□□ -1.37
CD44-219ENST00000525685 PCOLCE2Q9UKZ9 415 aa6.5□□□□□ -1.37
CD44-219ENST00000525685 ANGEL1Q9UNK9 670 aaKnown RBP6.5□□□□□ -1.37
CD44-219ENST00000525685 PRPF40AO75400 957 aaKnown RBP6.49□□□□□ -1.37
CD44-219ENST00000525685 FAM87AP0C7U9 286 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 NTF4P34130 210 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 CYP27C1Q4G0S4 372 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 LLGL2Q6P1M3 1020 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 NPAS4Q8IUM7 802 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 RGS22Q8NE09 1264 aa6.49□□□□□ -1.37
CD44-219ENST00000525685 RING1Q06587 406 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 LRRC14Q15048 493 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 PPM1JQ5JR12 505 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 PCNX4Q63HM2 1172 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 SCARA3Q6AZY7 606 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 ABI1Q8IZP0 508 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 KRTAP9-2Q9BYQ4 174 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 MRS2Q9HD23 443 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 ADGRE2Q9UHX3 823 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 CYP8B1Q9UNU6 501 aa6.48□□□□□ -1.37
CD44-219ENST00000525685 DCDC2CA8MYV0 355 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 LEFTY1O75610 366 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 EIF4BP23588 611 aaKnown RBP6.47□□□□□ -1.37
CD44-219ENST00000525685 ITGAEP38570 1179 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 SV2BQ7L1I2 683 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.47□□□□□ -1.37
CD44-219ENST00000525685 FBXL18Q96ME1 805 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 DUSP9Q99956 384 aaKnown RBP6.47□□□□□ -1.37
CD44-219ENST00000525685 RNF19AQ9NV58 838 aa6.47□□□□□ -1.37
CD44-219ENST00000525685 TTF2Q9UNY4 1162 aaKnown RBP6.47□□□□□ -1.37
CD44-219ENST00000525685 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.46□□□□□ -1.38
CD44-219ENST00000525685 TAL1P17542 331 aaPredicted RBP6.46□□□□□ -1.38
CD44-219ENST00000525685 PSMD2Q13200 908 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 C12orf40Q86WS4 652 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 DUSP23Q9BVJ7 150 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 SSU72Q9NP77 194 aaKnown RBP6.46□□□□□ -1.38
CD44-219ENST00000525685 PCDHA4Q9UN74 947 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 CSADQ9Y600 493 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 AK5Q9Y6K8 562 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 U3KQE9 123 aa6.46□□□□□ -1.38
CD44-219ENST00000525685 FANCGO15287 622 aa6.45□□□□□ -1.38
CD44-219ENST00000525685 RBM25P49756 843 aaKnown RBP6.45□□□□□ -1.38
CD44-219ENST00000525685 PTPN11Q06124 597 aaPredicted RBP6.45□□□□□ -1.38
CD44-219ENST00000525685 ZBTB37Q5TC79 503 aa6.45□□□□□ -1.38
CD44-219ENST00000525685 UBE3DQ7Z6J8 389 aa6.45□□□□□ -1.38
CD44-219ENST00000525685 FAM181AQ8N9Y4 354 aa6.45□□□□□ -1.38
CD44-219ENST00000525685 PAK6Q9NQU5 681 aaPredicted RBP6.45□□□□□ -1.38
CD44-219ENST00000525685 KRTAP9-6A0A140TA67 174 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 INPP5AQ14642 412 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 TTBK2Q6IQ55 1244 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 WFDC3Q8IUB2 231 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 TP53INP2Q8IXH6 220 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 TOP6BLQ8N6T0 577 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 FLCNQ8NFG4 579 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 BCL7CQ8WUZ0 217 aaPredicted RBP6.44□□□□□ -1.38
CD44-219ENST00000525685 GAL3ST3Q96A11 431 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms