RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	ADAM21	Q9UKJ8	722 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	NFE2L3	Q9Y4A8	694 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	RGPD5	Q99666	1765 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	NT5DC1	Q5TFE4	455 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	EPC1	Q9H2F5	836 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	RAI14	Q9P0K7	980 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	FBXO3	Q9UK99	471 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	AXIN2	Q9Y2T1	843 aa		11.74	□□□□□ -0.53
SPIDR-225	ENST00000524141	MDM2	Q00987	491 aa	Predicted RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	POSTN	Q15063	836 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	IQUB	Q8NA54	791 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	CCDC191	Q8NCU4	936 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	DCAF5	Q96JK2	942 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	CLIC6	Q96NY7	704 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	RASSF4	Q9H2L5	321 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	TJP1	Q07157	1748 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	KIF5C	O60282	957 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	USP5	P45974	858 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	PIP4K2A	P48426	406 aa	Predicted RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	ADK	P55263	362 aa	Known RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	PDE4B	Q07343	736 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	LRRC24	Q50LG9	513 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	KANK3	Q6NY19	840 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	HDX	Q7Z353	690 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	RAB11FIP4	Q86YS3	637 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	MAN1B1	Q9UKM7	699 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	FER1L4	A9Z1Z3	1794 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	ECM29	Q5VYK3	1845 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	NUP188	Q5SRE5	1749 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	GPAA1	O43292	621 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	TUBB	P07437	444 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	IVL	P07476	585 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	BMP6	P22004	513 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	CDC27	P30260	824 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	IARS	P41252	1262 aa	Known RBP	11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	LMAN1	P49257	510 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	APOA5	Q6Q788	366 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	LEKR1	Q6ZMV7	388 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	TMEM87B	Q96K49	555 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	TRERF1	Q96PN7	1200 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.73	□□□□□ -0.53	1e-6	■■■■□ 20.4
SPIDR-225	ENST00000524141	STK36	Q9NRP7	1315 aa		11.73	□□□□□ -0.53
SPIDR-225	ENST00000524141	SH2B2	O14492	632 aa	Predicted RBP	11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	ACTN2	P35609	894 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	WASF1	Q92558	559 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	AIFM3	Q96NN9	605 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	TRIM34	Q9BYJ4	488 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	CDC23	Q9UJX2	597 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	RAB21	Q9UL25	225 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	ERCC5	P28715	1186 aa	Predicted RBP	11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	MORC3	Q14149	939 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	NR1I3	Q14994	352 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	KARS	Q15046	597 aa	Known RBP	11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	MSANTD4	Q8NCY6	345 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141	GBP3	Q9H0R5	595 aa		11.72	□□□□□ -0.53
SPIDR-225	ENST00000524141		A0A1B0GTH6	734 aa		11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	VGLL3	A8MV65	326 aa		11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	ZBTB43	O43298	467 aa		11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	SARS	P49591	514 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	SAFB	Q15424	915 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	LMOD2	Q6P5Q4	547 aa		11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	DESI2	Q9BSY9	194 aa		11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	PUS7L	Q9H0K6	701 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-225	ENST00000524141	MYO1C	O00159	1063 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	PLCD1	P51178	756 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	FMR1	Q06787	632 aa	Known RBP eCLIP	11.71	□□□□□ -0.54	1e-11	■■■■■ 41.2
SPIDR-225	ENST00000524141	PTPN21	Q16825	1174 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	BEND6	Q5SZJ8	279 aa	Predicted RBP	11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	PPFIBP1	Q86W92	1011 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	NOSTRIN	Q8IVI9	506 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	ZNF579	Q8NAF0	562 aa	Known RBP	11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	IPO4	Q8TEX9	1081 aa	Known RBP	11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	XAGE2	Q96GT9	111 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	MRPL44	Q9H9J2	332 aa	Known RBP	11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	NLRP2	Q9NX02	1062 aa		11.71	□□□□□ -0.54
SPIDR-225	ENST00000524141	ATRN	O75882	1429 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141		H3BQF6	201 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	CCDC57	Q2TAC2	916 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	HSP90AA4P	Q58FG1	418 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	MICU3	Q86XE3	530 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	PHKB	Q93100	1093 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	ZNF594	Q96JF6	807 aa	Predicted RBP	11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	CTAGE1	Q96RT6	745 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	ACBD3	Q9H3P7	528 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	ADGRG1	Q9Y653	693 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	UBN2	Q6ZU65	1347 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	CTAGE9	A4FU28	777 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	PTPRE	P23469	700 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	TNNT3	P45378	269 aa	Predicted RBP	11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	RILPL1	Q5EBL4	403 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	SGMS1	Q86VZ5	419 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	GLI3	P10071	1580 aa		11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	PARP4	Q9UKK3	1724 aa	Known RBP	11.7	□□□□□ -0.54
SPIDR-225	ENST00000524141	GOLGA8A	A7E2F4	631 aa		11.69	□□□□□ -0.54
SPIDR-225	ENST00000524141	POLR2D	O15514	142 aa	Known RBP	11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms