RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	LRRC24	Q50LG9	513 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	CDC42EP5	Q6NZY7	148 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	SCYL3	Q8IZE3	742 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	SUCLG2	Q96I99	432 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	NBPF3	Q9H094	633 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	DAGLA	Q9Y4D2	1042 aa		13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	DDX60L	Q5H9U9	1706 aa	Known RBP	13.24	□□□□□ -0.29
CLDND1-231	ENST00000515620	RPTOR	Q8N122	1335 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	HMGCR	P04035	888 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	PTPRA	P18433	802 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	DIXDC1	Q155Q3	683 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	ANKRD13C	Q8N6S4	541 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	C11orf49	Q9H6J7	331 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	FAM198A	Q9UFP1	575 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	SLC45A1	Q9Y2W3	748 aa		13.23	□□□□□ -0.29
CLDND1-231	ENST00000515620	ATRNL1	Q5VV63	1379 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	FANCI	Q9NVI1	1328 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	AK9	Q5TCS8	1911 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	TRIM75P	A6NK02	468 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	WWC1	Q8IX03	1113 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	ZFPM1	Q8IX07	1006 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	VGLL2	Q8N8G2	317 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	AFG3L2	Q9Y4W6	797 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	DOCK2	Q92608	1830 aa		13.22	□□□□□ -0.29
CLDND1-231	ENST00000515620	PHF20L1	A8MW92	1017 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	PDE8B	O95263	885 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	ZEB1	P37275	1124 aa	Predicted RBP	13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	TRIM32	Q13049	653 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	KAZALD1	Q96I82	304 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	FAM161B	Q96MY7	647 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	GUCD1	Q96NT3	240 aa		13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	HMX1	Q9NP08	348 aa	Predicted RBP	13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.21	□□□□□ -0.29
CLDND1-231	ENST00000515620	PFAS	O15067	1338 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	PTPRF	P10586	1907 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	VAMP4	O75379	141 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	PRDX5	P30044	214 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	FAM110C	Q1W6H9	321 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	CCDC27	Q2M243	656 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	TREML2	Q5T2D2	321 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	SLC4A10	Q6U841	1118 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	CCDC84	Q86UT8	332 aa	Predicted RBP	13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	WDR66	Q8TBY9	1149 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	USP40	Q9NVE5	1235 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	AGTPBP1	Q9UPW5	1226 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	CACNA1F	O60840	1977 aa		13.2	□□□□□ -0.3
CLDND1-231	ENST00000515620	IL16	Q14005	1332 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	DOCK1	Q14185	1865 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	ALDH1L1	O75891	902 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	IFIT1	P09914	478 aa	Known RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	MDM2	Q00987	491 aa	Predicted RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	PUM3	Q15397	648 aa	Known RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	SRCIN1	Q9C0H9	1055 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	BICC1	Q9H694	974 aa	Known RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	PNMA3	Q9UL41	463 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	OGDHL	Q9ULD0	1010 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	LRRFIP2	Q9Y608	721 aa	Known RBP	13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	MYH13	Q9UKX3	1938 aa		13.19	□□□□□ -0.3
CLDND1-231	ENST00000515620	KIF16B	Q96L93	1317 aa		13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	VCAN	P13611	3396 aa		13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	SLURP2	P0DP57	97 aa		13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	RGS3	P49796	1198 aa		13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	CACNB1	Q02641	598 aa	Predicted RBP	13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	EXOSC9	Q06265	439 aa	Known RBP	13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	KLHDC4	Q8TBB5	520 aa		13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620		U3KPZ7	1027 aa	Predicted RBP	13.18	□□□□□ -0.3
CLDND1-231	ENST00000515620	COL2A1	P02458	1487 aa	Predicted RBP	13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	LDHB	P07195	334 aa	Known RBP	13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	FGFR2	P21802	821 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	SH3BP5L	Q7L8J4	393 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	ANKRD44	Q8N8A2	993 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	TRIB2	Q92519	343 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	PHIP	Q8WWQ0	1821 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	DOCK3	Q8IZD9	2030 aa		13.17	□□□□□ -0.3
CLDND1-231	ENST00000515620	POTEB2	H3BUK9	544 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	CTNND1	O60716	968 aa	Known RBP	13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	ENTPD3	O75355	529 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	PRKAR2A	P13861	404 aa	Known RBP	13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	SLC5A1	P13866	664 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	GCLC	P48506	637 aa	Predicted RBP	13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	LRRC26	Q2I0M4	334 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	RABL6	Q3YEC7	729 aa	Predicted RBP	13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	PRDM6	Q9NQX0	595 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	FOXD4L1	Q9NU39	408 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	GJD2	Q9UKL4	321 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	RFX7	Q2KHR2	1363 aa		13.16	□□□□□ -0.3
CLDND1-231	ENST00000515620	LOC285556	D6RIA3	1793 aa		13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	DDTL	A6NHG4	134 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	COL6A1	P12109	1028 aa		13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	ZNF697	Q5TEC3	545 aa		13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	IDI2	Q9BXS1	227 aa		13.15	□□□□□ -0.3
CLDND1-231	ENST00000515620	UTY	O14607	1347 aa		13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	CYP2B6	P20813	491 aa		13.14	□□□□□ -0.31
CLDND1-231	ENST00000515620	MAP3K10	Q02779	954 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms