RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 EIF6P56537 245 aaKnown RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 ADALQ6DHV7 355 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 RTCBQ9Y3I0 505 aaKnown RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 TARBP1Q13395 1621 aaKnown RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 MYOM2P54296 1465 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 BICDL2A1A5D9 508 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 ZNF500O60304 480 aaPredicted RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 CUL4AQ13619 759 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 TTC38Q5R3I4 469 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 ZNF589Q86UQ0 364 aaPredicted RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 SPATA5Q8NB90 893 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 KDRP35968 1356 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 CYP21A2P08686 494 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 PFKFB1P16118 471 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 KRT9P35527 623 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 TAOK3Q9H2K8 898 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 DENND2AQ9ULE3 1009 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 AATKQ6ZMQ8 1374 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 SYNMO15061 1565 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 PDE4DQ08499 809 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 POSTNQ15063 836 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 ZNF827Q17R98 1081 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 SMARCC2Q8TAQ2 1214 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 SCLT1Q96NL6 688 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 UIMC1Q96RL1 719 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 HAUS7Q99871 368 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 PUS3Q9BZE2 481 aaKnown RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 EHMT1Q9H9B1 1298 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 RBM28Q9NW13 759 aaKnown RBP14.3□□□□□ -0.12
USP53-209ENST00000514665 TAB2Q9NYJ8 693 aa14.3□□□□□ -0.12
USP53-209ENST00000514665 KDM5DQ9BY66 1539 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 TRAF5O00463 557 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 CTNNA2P26232 953 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 HIBADHP31937 336 aaKnown RBP14.29□□□□□ -0.12
USP53-209ENST00000514665 TEX11Q8IYF3 940 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 IFT81Q8WYA0 676 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 IGSF1Q8N6C5 1336 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 GNPATO15228 680 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 PFKFB2O60825 505 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 WDHD1O75717 1129 aaPredicted RBP14.29□□□□□ -0.12
USP53-209ENST00000514665 ZNF274Q96GC6 653 aaPredicted RBP14.29□□□□□ -0.12
USP53-209ENST00000514665 NYXQ9GZU5 481 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 FAM135BQ49AJ0 1406 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 GOLGA6L10A0A0M3HER8 536 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 UBE4AQ14139 1066 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 IFI16Q16666 785 aaKnown RBP14.29□□□□□ -0.12
USP53-209ENST00000514665 AKNAD1Q5T1N1 836 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 GPCPD1Q9NPB8 672 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 COPRSQ9NQ92 184 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 SERTAD1Q9UHV2 236 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 NRBP1Q9UHY1 535 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 PCDHA7Q9UN72 937 aa14.29□□□□□ -0.12
USP53-209ENST00000514665 SYNRGQ9UMZ2 1314 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 ARHGAP6O43182 974 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 LARGE1O95461 756 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 ADKP55263 362 aaKnown RBP14.28□□□□□ -0.12
USP53-209ENST00000514665 SCRN1Q12765 414 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 CCDC174Q6PII3 467 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 NOC4LQ9BVI4 516 aaKnown RBP14.28□□□□□ -0.12
USP53-209ENST00000514665 PYCARDQ9ULZ3 195 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 SPDYE3A6NKU9 549 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 TXKP42681 527 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 MICALCLQ6ZW33 695 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 CSGALNACT2Q8N6G5 542 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 FTOQ9C0B1 505 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP53-209ENST00000514665 BTBD18B2RXH4 712 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 GCOM1H8Y6P7 765 aaPredicted RBP14.28□□□□□ -0.12
USP53-209ENST00000514665 ZEB2O60315 1214 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 MYZAPP0CAP1 466 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 PARP10Q53GL7 1025 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 PPP4R3AQ6IN85 833 aa14.28□□□□□ -0.12
USP53-209ENST00000514665 GTPBP4Q9BZE4 634 aaKnown RBP14.28□□□□□ -0.12
USP53-209ENST00000514665 ABCA8O94911 1581 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 PARP1P09874 1014 aaKnown RBP14.27□□□□□ -0.12
USP53-209ENST00000514665 TERF1P54274 439 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 SMC1AQ14683 1233 aaKnown RBP14.27□□□□□ -0.12
USP53-209ENST00000514665 ZRSR2Q15696 482 aaKnown RBP14.27□□□□□ -0.12
USP53-209ENST00000514665 ANKRD2Q9GZV1 360 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 BLZF1Q9H2G9 400 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 PDE6AP16499 860 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 HOOK3Q86VS8 718 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 RGS22Q8NE09 1264 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 IMPACTQ9P2X3 320 aa14.27□□□□□ -0.12
USP53-209ENST00000514665 BCORL1Q5H9F3 1711 aa14.27□□□□□ -0.13
USP53-209ENST00000514665 PLCG2P16885 1265 aa14.27□□□□□ -0.13
USP53-209ENST00000514665 PDIA3P30101 505 aaKnown RBP14.27□□□□□ -0.13
USP53-209ENST00000514665 RNASE9P60153 205 aaKnown RBP14.27□□□□□ -0.13
USP53-209ENST00000514665 FAM47AQ5JRC9 791 aa14.27□□□□□ -0.13
USP53-209ENST00000514665 CLIC6Q96NY7 704 aa14.27□□□□□ -0.13
USP53-209ENST00000514665 ZNF215Q9UL58 517 aaPredicted RBP14.27□□□□□ -0.13
USP53-209ENST00000514665 ADORA1P30542 326 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 PLS1Q14651 629 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 ZNF654Q8IZM8 581 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 TBC1D5Q92609 795 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 NDUFA8P51970 172 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 SV2BQ7L1I2 683 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 IPO4Q8TEX9 1081 aaKnown RBP14.26□□□□□ -0.13
USP53-209ENST00000514665 BICD1Q96G01 975 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 PSMB7Q99436 277 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 SLF1Q9BQI6 1058 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms