RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 RIOK1Q9BRS2 568 aaKnown RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 CBX8Q9HC52 389 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 KINO60870 393 aaKnown RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 YEATS4O95619 227 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 IARSP41252 1262 aaKnown RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 KRT40Q6A162 431 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 FBXO33Q7Z6M2 555 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 MPNDQ8N594 471 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 KCNG4Q8TDN1 519 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 ARHGEF1Q92888 912 aaKnown RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 NAP1L5Q96NT1 182 aaPredicted RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 ZKSCAN3Q9BRR0 538 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 RNF41Q9H4P4 317 aaPredicted RBP9.54□□□□□ -0.88
CPNE4-211ENST00000514439 SPATA31A6Q5VVP1 1343 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 CACNA1SQ13698 1873 aa9.54□□□□□ -0.88
CPNE4-211ENST00000514439 CHD4Q14839 1912 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 NID2Q14112 1375 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 A0A1W2PQ27 194 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 A0A1W2PQ64 194 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 A0A1W2PQD8 194 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 CTAGE5O15320 804 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 SART3Q15020 963 aaKnown RBP9.53□□□□□ -0.88
CPNE4-211ENST00000514439 ADALQ6DHV7 355 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 TPTE2Q6XPS3 522 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 SYNE3Q6ZMZ3 975 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 ZNF384Q8TF68 577 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 MRPS27Q92552 414 aaKnown RBP9.53□□□□□ -0.88
CPNE4-211ENST00000514439 DNAJC25Q9H1X3 360 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 TAOK2Q9UL54 1235 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 MINDY4BA8MYZ0 360 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 SMIM22K7EJ46 135 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 SPTLC2O15270 562 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 DYNLL1P63167 89 aaKnown RBP9.53□□□□□ -0.88
CPNE4-211ENST00000514439 WTAPQ15007 396 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 SF3A1Q15459 793 aaKnown RBP9.53□□□□□ -0.88
CPNE4-211ENST00000514439 ANAPC4Q9UJX5 808 aa9.53□□□□□ -0.88
CPNE4-211ENST00000514439 STK36Q9NRP7 1315 aa9.52□□□□□ -0.88
CPNE4-211ENST00000514439 ERICH2A1L162 156 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 UBE2Q2LH0YL09 131 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 SEMA3EO15041 775 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 OFD1O75665 1012 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 ZNF165P49910 485 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 ANO1Q5XXA6 986 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 FMR1NBQ8N0W7 255 aaPredicted RBP9.52□□□□□ -0.89
CPNE4-211ENST00000514439 TDRD7Q8NHU6 1098 aaKnown RBP9.52□□□□□ -0.89
CPNE4-211ENST00000514439 MTA3Q9BTC8 594 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 SLC26A6Q9BXS9 759 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 ANKRD2Q9GZV1 360 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 TFCP2L1Q9NZI6 479 aa9.52□□□□□ -0.89
CPNE4-211ENST00000514439 A0A1B0GVL5 298 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 FMNL1O95466 1100 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 IFNAR1P17181 557 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 TM4SF1P30408 202 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 SSRP1Q08945 709 aaKnown RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 RTN1Q16799 776 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 ZNF830Q96NB3 372 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 BRIP1Q9BX63 1249 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 PDS5AQ29RF7 1337 aaKnown RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 CYP2D7A0A087X1C5 515 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 NPHP1O15259 732 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 CAVIN2O95810 425 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 HIBADHP31937 336 aaKnown RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 NDUFA8P51970 172 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 GNL2Q13823 731 aaKnown RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 TRIM29Q14134 588 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 STX1AQ16623 288 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 ECM29Q5VYK3 1845 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 C11orf57Q6ZUT1 292 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 ESR2Q92731 530 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 NSUN4Q96CB9 384 aaKnown RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 GJD4Q96KN9 370 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 UBAC1Q9BSL1 405 aa9.51□□□□□ -0.89
CPNE4-211ENST00000514439 TTC12Q9H892 705 aaPredicted RBP9.51□□□□□ -0.89
CPNE4-211ENST00000514439 TNRC6CQ9HCJ0 1690 aaKnown RBP9.5□□□□□ -0.89
CPNE4-211ENST00000514439 TNKSO95271 1327 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 U2AF2P26368 475 aaKnown RBP eCLIP9.5□□□□□ -0.89
CPNE4-211ENST00000514439 GUCY1A2P33402 732 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 RFC4P35249 363 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 RCAN1P53805 252 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 MECOMQ03112 1051 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 KIAA2012Q0VF49 1180 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 SLC39A14Q15043 492 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 AXDND1Q5T1B0 1012 aaPredicted RBP9.5□□□□□ -0.89
CPNE4-211ENST00000514439 ZNF654Q8IZM8 581 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 TMTC2Q8N394 836 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 LY75O60449 1722 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 MROH7-TTC4A0A0A0MT08 1334 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 PRDX5P30044 214 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 CHAF1AQ13111 956 aaPredicted RBP9.5□□□□□ -0.89
CPNE4-211ENST00000514439 SEC23AQ15436 765 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 TRAPPC3LQ5T215 181 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 MEX3CQ5U5Q3 659 aaKnown RBP9.5□□□□□ -0.89
CPNE4-211ENST00000514439 FAM196AQ6ZSG2 479 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 TXNRD3Q86VQ6 643 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 SPC24Q8NBT2 197 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 WASF1Q92558 559 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms