RNA–Protein interactions for RNA: ENST00000513803.5

NFKB1-211, Transcript of nuclear factor kappa B subunit 1, human

TSL 4

Gene NFKB1, Length 612 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NFKB1-211	ENST00000513803	COL9A1	P20849	921 aa		13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	MDM2	Q00987	491 aa	Predicted RBP	13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	FAM110C	Q1W6H9	321 aa		13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	EPHA10	Q5JZY3	1008 aa		13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	SCYL3	Q8IZE3	742 aa		13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	MAFA	Q8NHW3	353 aa	Predicted RBP	13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	PNMA3	Q9UL41	463 aa		13.71	□□□□□ -0.21
NFKB1-211	ENST00000513803	CDC42EP5	Q6NZY7	148 aa		13.7	□□□□□ -0.22
NFKB1-211	ENST00000513803	CDX2	Q99626	313 aa	Predicted RBP	13.7	□□□□□ -0.22
NFKB1-211	ENST00000513803	PUS3	Q9BZE2	481 aa	Known RBP	13.7	□□□□□ -0.22
NFKB1-211	ENST00000513803	PHF20L1	A8MW92	1017 aa		13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	GRM8	O00222	908 aa		13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	GCLC	P48506	637 aa	Predicted RBP	13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	TSR2	Q969E8	191 aa	Known RBP	13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	GJD2	Q9UKL4	321 aa		13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	AGTPBP1	Q9UPW5	1226 aa		13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	LRRFIP2	Q9Y608	721 aa	Known RBP	13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.69	□□□□□ -0.22
NFKB1-211	ENST00000513803	AK9	Q5TCS8	1911 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	PFAS	O15067	1338 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	COL6A1	P12109	1028 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	ZEB1	P37275	1124 aa	Predicted RBP	13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	NFIA	Q12857	509 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	BEND3	Q5T5X7	828 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	WDR66	Q8TBY9	1149 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	SEMA6B	Q9H3T3	888 aa		13.68	□□□□□ -0.22
NFKB1-211	ENST00000513803	TRIM75P	A6NK02	468 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	CTNND1	O60716	968 aa	Known RBP	13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	TRIM32	Q13049	653 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	USP40	Q9NVE5	1235 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	FAM198A	Q9UFP1	575 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	DAGLA	Q9Y4D2	1042 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	EYS	Q5T1H1	3165 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803		A0A1B0GUL6	1792 aa		13.67	□□□□□ -0.22
NFKB1-211	ENST00000513803	PDE8B	O95263	885 aa		13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	PRKAR2A	P13861	404 aa	Known RBP	13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	LRRC26	Q2I0M4	334 aa		13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	METTL24	Q5JXM2	366 aa		13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	MAP3K21	Q5TCX8	1036 aa		13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	TRMT44	Q8IYL2	757 aa	Known RBP	13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	PRKAG2	Q9UGJ0	569 aa		13.66	□□□□□ -0.22
NFKB1-211	ENST00000513803	IFIT1	P09914	478 aa	Known RBP	13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	XRCC5	P13010	732 aa	Known RBP	13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	CYP2B6	P20813	491 aa		13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	MAP3K10	Q02779	954 aa		13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	ZFPM1	Q8IX07	1006 aa		13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	TRIB2	Q92519	343 aa		13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	NCOR1	O75376	2440 aa		13.65	□□□□□ -0.22
NFKB1-211	ENST00000513803	COL2A1	P02458	1487 aa	Predicted RBP	13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803		F6X3S4	739 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	TNFRSF10A	O00220	468 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	ENTPD3	O75355	529 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	DIXDC1	Q155Q3	683 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	TREML2	Q5T2D2	321 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	NUDT12	Q9BQG2	462 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	DNAH12	Q6ZR08	3092 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	DDX60L	Q5H9U9	1706 aa	Known RBP	13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	KIF16B	Q96L93	1317 aa		13.64	□□□□□ -0.23
NFKB1-211	ENST00000513803	ALDH1L1	O75891	902 aa		13.63	□□□□□ -0.23
NFKB1-211	ENST00000513803	RGS3	P49796	1198 aa		13.63	□□□□□ -0.23
NFKB1-211	ENST00000513803	TJAP1	Q5JTD0	557 aa		13.63	□□□□□ -0.23
NFKB1-211	ENST00000513803	IDI2	Q9BXS1	227 aa		13.63	□□□□□ -0.23
NFKB1-211	ENST00000513803	ATRNL1	Q5VV63	1379 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	LDHB	P07195	334 aa	Known RBP	13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	FOSL2	P15408	326 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	PUM3	Q15397	648 aa	Known RBP	13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	LRRC24	Q50LG9	513 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	LHX8	Q68G74	356 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	VGLL2	Q8N8G2	317 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	SOCS4	Q8WXH5	440 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	MYLIP	Q8WY64	445 aa		13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.62	□□□□□ -0.23
NFKB1-211	ENST00000513803	ZKSCAN1	P17029	563 aa	Predicted RBP	13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	SMAD3	P84022	425 aa	Known RBP	13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	CACNB2	Q08289	660 aa	Predicted RBP	13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	SPP2	Q13103	211 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	PDE3A	Q14432	1141 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	FAM122A	Q96E09	287 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	TBC1D2	Q9BYX2	928 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	MORF4L1	Q9UBU8	362 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	MUC3A	Q02505	3323 aa		13.61	□□□□□ -0.23
NFKB1-211	ENST00000513803	PRDX5	P30044	214 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	PLA2G5	P39877	138 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	SHH	Q15465	462 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	CCAR1	Q8IX12	1150 aa	Known RBP	13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	ZNF280C	Q8ND82	737 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	SUCLG2	Q96I99	432 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	SRCIN1	Q9C0H9	1055 aa		13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	GNL3L	Q9NVN8	582 aa	Known RBP	13.6	□□□□□ -0.23
NFKB1-211	ENST00000513803	DDTL	A6NHG4	134 aa	Predicted RBP	13.59	□□□□□ -0.23
NFKB1-211	ENST00000513803	TBC1D12	O60347	775 aa		13.59	□□□□□ -0.23
NFKB1-211	ENST00000513803	VAMP4	O75379	141 aa		13.59	□□□□□ -0.23
NFKB1-211	ENST00000513803	SLC5A1	P13866	664 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms