RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CALM1P0DP23 149 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CALM2P0DP24 149 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CALM3P0DP25 149 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 EPHA10Q5JZY3 1008 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 SARM1Q6SZW1 724 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CRNKL1Q9BZJ0 848 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 VPS16Q9H269 839 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 IGKV5-2P06315 115 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 USP8P40818 1118 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 KRT83P78385 493 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 SLC39A14Q15043 492 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CCDC96Q2M329 555 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CCDC144BQ3MJ40 725 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 DZIP3Q86Y13 1208 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CAPZA3Q96KX2 299 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 PUS3Q9BZE2 481 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 RAB34Q9BZG1 259 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CTNND2Q9UQB3 1225 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 PPP2R2CQ9Y2T4 447 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 LUC7L2Q9Y383 392 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CAMSAP1Q5T5Y3 1602 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 SH3TC1Q8TE82 1336 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 KRT86O43790 486 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 TUBBP07437 444 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 TMEM266Q2M3C6 531 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 CCDC178Q5BJE1 867 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 KRBA2Q6ZNG9 492 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 DRC1Q96MC2 740 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 GPR108Q9NPR9 543 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 SYNRGQ9UMZ2 1314 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 OAS2P29728 719 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 VAT1LQ9HCJ6 419 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 TTF2Q9UNY4 1162 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 ZMYM6O95789 1325 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 CPS1P31327 1500 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 ZC3H13Q5T200 1668 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 M0R2C6 588 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 NAPGQ99747 312 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 DESI2Q9BSY9 194 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 V9GY48 417 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 NEURL4Q96JN8 1562 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 PUM3Q15397 648 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF827Q17R98 1081 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 NOSTRINQ8IVI9 506 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 GPR161Q8N6U8 529 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 FAM107BQ9H098 131 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 USP31Q70CQ4 1352 aa9.53□□□□□ -0.88
LIMCH1-216ENST00000512820 USP42Q9H9J4 1324 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 ADGRB2O60241 1585 aa9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 EFCAB8A8MWE9 144 aa9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 BBXQ8WY36 941 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 STX8Q9UNK0 236 aa9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 PCDHA5Q9Y5H7 936 aa9.52□□□□□ -0.88
LIMCH1-216ENST00000512820 ADORA1P30542 326 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 KIF5AQ12840 1032 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 TCIRG1Q13488 830 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 IKBKBO14920 756 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 CALML3P27482 149 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 ASIC1P78348 528 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 TUBB2AQ13885 445 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 NAA30Q147X3 362 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 CCDC122Q5T0U0 273 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 ANKRD18AQ8IVF6 992 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 OSBP2Q969R2 916 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 TUBB2BQ9BVA1 445 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 GOLPH3LQ9H4A5 285 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 VWDEQ8N2E2 1590 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 MYOM1P52179 1685 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 KIF23Q02241 960 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 GOLGA8FQ08AF8 430 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 GOLGA8DPQ0D2H9 430 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 SMC1AQ14683 1233 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 CCDC40Q4G0X9 1142 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 WWC2Q6AWC2 1192 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 HEATR3Q7Z4Q2 680 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 CCDC42Q96M95 316 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 GPHNQ9NQX3 736 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 ANKIB1Q9P2G1 1089 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 MAPK8IP1Q9UQF2 711 aa9.52□□□□□ -0.89
LIMCH1-216ENST00000512820 BTBD18B2RXH4 712 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 TACC1O75410 805 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 PTPN21Q16825 1174 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 SLFNL1Q499Z3 407 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 CYP26C1Q6V0L0 522 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 PLIN2Q99541 437 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 ALDH8A1Q9H2A2 487 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 RBM28Q9NW13 759 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 NBPF11Q86T75 865 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 TMTC1Q8IUR5 882 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 NAA15Q9BXJ9 866 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 SEPT11Q9NVA2 429 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 AKNAD1Q5T1N1 836 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 LPIN2Q92539 896 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 STAMQ92783 540 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 HLTFQ14527 1009 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 FBXO38Q6PIJ6 1188 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 DTHD1Q6ZMT9 781 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 DNAJC10Q8IXB1 793 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 C10orf67Q8IYJ2 551 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms