RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 ERVK-24P63145 666 aa9.71□□□□□ -0.86
NUP54-210ENST00000510884 CDK5R2Q13319 367 aa9.71□□□□□ -0.86
NUP54-210ENST00000510884 CYP27C1Q4G0S4 372 aa9.71□□□□□ -0.86
NUP54-210ENST00000510884 HCLS1P14317 486 aaPredicted RBP9.7□□□□□ -0.86
NUP54-210ENST00000510884 MAP1SQ66K74 1059 aaPredicted RBP9.7□□□□□ -0.86
NUP54-210ENST00000510884 TPTE2Q6XPS3 522 aa9.7□□□□□ -0.86
NUP54-210ENST00000510884 CBLL1Q75N03 491 aa9.7□□□□□ -0.86
NUP54-210ENST00000510884 GPBAR1Q8TDU6 330 aa9.7□□□□□ -0.86
NUP54-210ENST00000510884 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
NUP54-210ENST00000510884 RNF214Q8ND24 703 aa9.69□□□□□ -0.86
NUP54-210ENST00000510884 PCOLCE2Q9UKZ9 415 aa9.69□□□□□ -0.86
NUP54-210ENST00000510884 WWC3Q9ULE0 1092 aa9.69□□□□□ -0.86
NUP54-210ENST00000510884 P4HBP07237 508 aaKnown RBP9.68□□□□□ -0.86
NUP54-210ENST00000510884 FAM87AP0C7U9 286 aa9.68□□□□□ -0.86
NUP54-210ENST00000510884 BMP6P22004 513 aa9.68□□□□□ -0.86
NUP54-210ENST00000510884 ISL2Q96A47 359 aa9.68□□□□□ -0.86
NUP54-210ENST00000510884 PAK6Q9NQU5 681 aaPredicted RBP9.68□□□□□ -0.86
NUP54-210ENST00000510884 SPG7Q9UQ90 795 aa9.68□□□□□ -0.86
NUP54-210ENST00000510884 SAMM50Q9Y512 469 aa9.68□□□□□ -0.86
NUP54-210ENST00000510884 PATL2C9JE40 543 aaKnown RBP9.67□□□□□ -0.86
NUP54-210ENST00000510884 PAGE1O75459 146 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 TRIM37O94972 964 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 SCARA3Q6AZY7 606 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 WFDC3Q8IUB2 231 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 FLCNQ8NFG4 579 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 C12orf49Q9H741 205 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 CBX8Q9HC52 389 aa9.67□□□□□ -0.86
NUP54-210ENST00000510884 RNGTTO60942 597 aaKnown RBP9.66□□□□□ -0.86
NUP54-210ENST00000510884 COL19A1Q14993 1142 aa9.66□□□□□ -0.86
NUP54-210ENST00000510884 KRTAP19-1Q8IUB9 90 aa9.66□□□□□ -0.86
NUP54-210ENST00000510884 TP53INP2Q8IXH6 220 aa9.66□□□□□ -0.86
NUP54-210ENST00000510884 AGBL5Q8NDL9 886 aa9.66□□□□□ -0.86
NUP54-210ENST00000510884 FAM8A1Q9UBU6 413 aa9.66□□□□□ -0.86
NUP54-210ENST00000510884 FBXO24O75426 580 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 NTF4P34130 210 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 MPRIPQ6WCQ1 1025 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 STK11IPQ8N1F8 1099 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 GRIN3AQ8TCU5 1115 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 BCL7CQ8WUZ0 217 aaPredicted RBP9.65□□□□□ -0.86
NUP54-210ENST00000510884 MISP3Q96FF7 219 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 ACSBG1Q96GR2 724 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 DUSP23Q9BVJ7 150 aa9.65□□□□□ -0.86
NUP54-210ENST00000510884 RING1Q06587 406 aa9.64□□□□□ -0.87
NUP54-210ENST00000510884 RASIP1Q5U651 963 aa9.64□□□□□ -0.87
NUP54-210ENST00000510884 LLGL2Q6P1M3 1020 aa9.64□□□□□ -0.87
NUP54-210ENST00000510884 MKNK2Q9HBH9 465 aa9.64□□□□□ -0.87
NUP54-210ENST00000510884 LEFTY1O75610 366 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 USP17L7P0C7H9 530 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 LRRC14Q15048 493 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.63□□□□□ -0.87
NUP54-210ENST00000510884 PLD6Q8N2A8 252 aaKnown RBP9.63□□□□□ -0.87
NUP54-210ENST00000510884 FAM181AQ8N9Y4 354 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 NETO1Q8TDF5 533 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 FRMD6Q96NE9 622 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 GOLGA2P5Q9HBQ8 144 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 SLC5A6Q9Y289 635 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 U3KQE9 123 aa9.63□□□□□ -0.87
NUP54-210ENST00000510884 LDHBP07195 334 aaKnown RBP9.62□□□□□ -0.87
NUP54-210ENST00000510884 CELA3AP09093 270 aa9.62□□□□□ -0.87
NUP54-210ENST00000510884 ITGB5P18084 799 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 TXKP42681 527 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 PPM1JQ5JR12 505 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 PCNX4Q63HM2 1172 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 CYP8B1Q9UNU6 501 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 RNF114Q9Y508 228 aa9.61□□□□□ -0.87
NUP54-210ENST00000510884 LCE3BQ5TA77 95 aa9.6□□□□□ -0.87
NUP54-210ENST00000510884 ZBTB37Q5TC79 503 aa9.6□□□□□ -0.87
NUP54-210ENST00000510884 ZNF574Q6ZN55 896 aaPredicted RBP9.6□□□□□ -0.87
NUP54-210ENST00000510884 KRTAP1-3Q8IUG1 177 aa9.6□□□□□ -0.87
NUP54-210ENST00000510884 TOP6BLQ8N6T0 577 aa9.6□□□□□ -0.87
NUP54-210ENST00000510884 SSU72Q9NP77 194 aaKnown RBP9.6□□□□□ -0.87
NUP54-210ENST00000510884 FANCGO15287 622 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 CEACAM5P06731 702 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 GNA15P30679 374 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 OXCT1P55809 520 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 IFI16Q16666 785 aaKnown RBP9.59□□□□□ -0.87
NUP54-210ENST00000510884 SV2BQ7L1I2 683 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 SPRED2Q7Z698 418 aa9.59□□□□□ -0.87
NUP54-210ENST00000510884 DCDC2CA8MYV0 355 aa9.58□□□□□ -0.88
NUP54-210ENST00000510884 PRPF40AO75400 957 aaKnown RBP9.58□□□□□ -0.88
NUP54-210ENST00000510884 FAM214BQ7L5A3 538 aa9.58□□□□□ -0.88
NUP54-210ENST00000510884 UBE3DQ7Z6J8 389 aa9.58□□□□□ -0.88
NUP54-210ENST00000510884 PCDHA4Q9UN74 947 aa9.58□□□□□ -0.88
NUP54-210ENST00000510884 CSADQ9Y600 493 aa9.58□□□□□ -0.88
NUP54-210ENST00000510884 PRKCQQ04759 706 aa9.57□□□□□ -0.88
NUP54-210ENST00000510884 C12orf40Q86WS4 652 aa9.57□□□□□ -0.88
NUP54-210ENST00000510884 GAL3ST3Q96A11 431 aa9.57□□□□□ -0.88
NUP54-210ENST00000510884 VAV3Q9UKW4 847 aa9.57□□□□□ -0.88
NUP54-210ENST00000510884 JUNBP17275 347 aaPredicted RBP9.56□□□□□ -0.88
NUP54-210ENST00000510884 KCT2Q8NC54 265 aa9.56□□□□□ -0.88
NUP54-210ENST00000510884 HEXIM2Q96MH2 286 aaKnown RBP9.56□□□□□ -0.88
NUP54-210ENST00000510884 TNKS2Q9H2K2 1166 aa9.56□□□□□ -0.88
NUP54-210ENST00000510884 TTF2Q9UNY4 1162 aaKnown RBP9.56□□□□□ -0.88
NUP54-210ENST00000510884 PLAGL2Q9UPG8 496 aa9.56□□□□□ -0.88
NUP54-210ENST00000510884 FUT4P22083 530 aa9.55□□□□□ -0.88
NUP54-210ENST00000510884 EIF4BP23588 611 aaKnown RBP9.55□□□□□ -0.88
NUP54-210ENST00000510884 FGD1P98174 961 aa9.55□□□□□ -0.88
NUP54-210ENST00000510884 BNIP3Q12983 259 aa9.55□□□□□ -0.88
NUP54-210ENST00000510884 PLCL1Q15111 1095 aa9.55□□□□□ -0.88
NUP54-210ENST00000510884 SND1Q7KZF4 910 aaKnown RBP eCLIP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms