RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 F6X3S4 739 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 RPN1P04843 607 aaKnown RBP11.34□□□□□ -0.59
USP53-207ENST00000510852 KRT18P05783 430 aaKnown RBP11.34□□□□□ -0.59
USP53-207ENST00000510852 PIK3CAP42336 1068 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 LRRC41Q15345 812 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 DCAF8Q5TAQ9 597 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 CCDC73Q6ZRK6 1079 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 COPS6Q7L5N1 327 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 PLPP6Q8IY26 295 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 MYO1HQ8N1T3 1032 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 TMEM57Q8N5G2 664 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 EXOC6Q8TAG9 804 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 ZBTB1Q9Y2K1 713 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 CEP83Q9Y592 693 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 APBA3O96018 575 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 CRKLP46109 303 aaKnown RBP11.34□□□□□ -0.59
USP53-207ENST00000510852 ZNF131P52739 623 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 INTS5Q6P9B9 1019 aaKnown RBP11.34□□□□□ -0.59
USP53-207ENST00000510852 TGIF2Q9GZN2 237 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 CCDC87Q9NVE4 849 aa11.34□□□□□ -0.59
USP53-207ENST00000510852 CGNQ9P2M7 1197 aaKnown RBP11.34□□□□□ -0.59
USP53-207ENST00000510852 PI4KAP2A4QPH2 592 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 KIF1CO43896 1103 aaKnown RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 CAND2O75155 1236 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 NBPF7P0C2Y1 421 aaPredicted RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 PI4KAP1Q8N8J0 262 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 JARID2Q92833 1246 aaPredicted RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 SLX1AQ9BQ83 275 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 MFRPQ9BY79 579 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 RABL2BQ9UNT1 228 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 CACNA1FO60840 1977 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 CAPN15O75808 1086 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 DDX58O95786 925 aaKnown RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 MVPQ14764 893 aaKnown RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 ZNF394Q53GI3 561 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 HSP90B2PQ58FF3 399 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 ITPRIPQ8IWB1 547 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 DUSP9Q99956 384 aaKnown RBP11.33□□□□□ -0.6
USP53-207ENST00000510852 CENPOQ9BU64 300 aa11.33□□□□□ -0.6
USP53-207ENST00000510852 CICQ96RK0 1608 aaPredicted RBP11.32□□□□□ -0.6
USP53-207ENST00000510852 ZNF831Q5JPB2 1677 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 ADCY9O60503 1353 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 PLSCR1O15162 318 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 IQCEQ6IPM2 695 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 SLC4A10Q6U841 1118 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 KSR2Q6VAB6 950 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 IQCF2Q8IXL9 164 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 LRRC4BQ9NT99 713 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 MAFFQ9ULX9 164 aa11.32□□□□□ -0.6
USP53-207ENST00000510852 LILRB3O75022 631 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 SKILP12757 684 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 ABCD1P33897 745 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 IL6STP40189 918 aaPredicted RBP11.31□□□□□ -0.6
USP53-207ENST00000510852 SLC27A3Q5K4L6 730 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 TTLL7Q6ZT98 887 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 FAM43AQ8N2R8 423 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 DNAAF4Q8WXU2 420 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 RNPC3Q96LT9 517 aaKnown RBP11.31□□□□□ -0.6
USP53-207ENST00000510852 MAP3K2Q9Y2U5 619 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 PPP2R3BQ9Y5P8 575 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 LY75O60449 1722 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 GOLGA6L22H0YM25 854 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 NUBP1P53384 320 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 GEMIN4P57678 1058 aaKnown RBP11.31□□□□□ -0.6
USP53-207ENST00000510852 TXNRD1Q16881 649 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 INTS3Q68E01 1043 aaKnown RBP11.31□□□□□ -0.6
USP53-207ENST00000510852 RIC3Q7Z5B4 369 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 CENPTQ96BT3 561 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 TBC1D20Q96BZ9 403 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 CNTNAP4Q9C0A0 1308 aa11.31□□□□□ -0.6
USP53-207ENST00000510852 TPM2P07951 284 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 HOXC13P31276 330 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 NFX1Q12986 1120 aaKnown RBP11.3□□□□□ -0.6
USP53-207ENST00000510852 RC3H1Q5TC82 1133 aaKnown RBP11.3□□□□□ -0.6
USP53-207ENST00000510852 KLHL10Q6JEL2 608 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 MYL3P08590 195 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 CCT4P50991 539 aaKnown RBP11.3□□□□□ -0.6
USP53-207ENST00000510852 PGBD3Q8N328 593 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 TMEM87AQ8NBN3 555 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 RELTQ969Z4 430 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 VMP1Q96GC9 406 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 RMI1Q9H9A7 625 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 DDX19BQ9UMR2 479 aa11.3□□□□□ -0.6
USP53-207ENST00000510852 hCG_1984214I3L0E3 225 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 KIF5CO60282 957 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 FANCCQ00597 558 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 SLFNL1Q499Z3 407 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 SPECC1Q5M775 1068 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 PLBD2Q8NHP8 589 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 FAM161BQ96MY7 647 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 COL5A3P25940 1745 aaPredicted RBP11.29□□□□□ -0.6
USP53-207ENST00000510852 CTHP32929 405 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 PPP2R5AQ15172 486 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 GRAMD1BQ3KR37 738 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 BEND3Q5T5X7 828 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 ACBD5Q5T8D3 534 aaPredicted RBP11.29□□□□□ -0.6
USP53-207ENST00000510852 KIF6Q6ZMV9 814 aa11.29□□□□□ -0.6
USP53-207ENST00000510852 XPO4Q9C0E2 1151 aaKnown RBP11.29□□□□□ -0.6
USP53-207ENST00000510852 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.29□□□□□ -0.6
USP53-207ENST00000510852 PXDNLA1KZ92 1463 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms