RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 ERVK-24P63145 666 aa9.71□□□□□ -0.86
NUP54-209ENST00000510569 CDK5R2Q13319 367 aa9.71□□□□□ -0.86
NUP54-209ENST00000510569 CYP27C1Q4G0S4 372 aa9.71□□□□□ -0.86
NUP54-209ENST00000510569 HCLS1P14317 486 aaPredicted RBP9.7□□□□□ -0.86
NUP54-209ENST00000510569 MAP1SQ66K74 1059 aaPredicted RBP9.7□□□□□ -0.86
NUP54-209ENST00000510569 TPTE2Q6XPS3 522 aa9.7□□□□□ -0.86
NUP54-209ENST00000510569 CBLL1Q75N03 491 aa9.7□□□□□ -0.86
NUP54-209ENST00000510569 GPBAR1Q8TDU6 330 aa9.7□□□□□ -0.86
NUP54-209ENST00000510569 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
NUP54-209ENST00000510569 RNF214Q8ND24 703 aa9.69□□□□□ -0.86
NUP54-209ENST00000510569 PCOLCE2Q9UKZ9 415 aa9.69□□□□□ -0.86
NUP54-209ENST00000510569 WWC3Q9ULE0 1092 aa9.69□□□□□ -0.86
NUP54-209ENST00000510569 P4HBP07237 508 aaKnown RBP9.68□□□□□ -0.86
NUP54-209ENST00000510569 FAM87AP0C7U9 286 aa9.68□□□□□ -0.86
NUP54-209ENST00000510569 BMP6P22004 513 aa9.68□□□□□ -0.86
NUP54-209ENST00000510569 ISL2Q96A47 359 aa9.68□□□□□ -0.86
NUP54-209ENST00000510569 PAK6Q9NQU5 681 aaPredicted RBP9.68□□□□□ -0.86
NUP54-209ENST00000510569 SPG7Q9UQ90 795 aa9.68□□□□□ -0.86
NUP54-209ENST00000510569 SAMM50Q9Y512 469 aa9.68□□□□□ -0.86
NUP54-209ENST00000510569 PATL2C9JE40 543 aaKnown RBP9.67□□□□□ -0.86
NUP54-209ENST00000510569 PAGE1O75459 146 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 TRIM37O94972 964 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 SCARA3Q6AZY7 606 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 WFDC3Q8IUB2 231 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 FLCNQ8NFG4 579 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 C12orf49Q9H741 205 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 CBX8Q9HC52 389 aa9.67□□□□□ -0.86
NUP54-209ENST00000510569 RNGTTO60942 597 aaKnown RBP9.66□□□□□ -0.86
NUP54-209ENST00000510569 COL19A1Q14993 1142 aa9.66□□□□□ -0.86
NUP54-209ENST00000510569 KRTAP19-1Q8IUB9 90 aa9.66□□□□□ -0.86
NUP54-209ENST00000510569 TP53INP2Q8IXH6 220 aa9.66□□□□□ -0.86
NUP54-209ENST00000510569 AGBL5Q8NDL9 886 aa9.66□□□□□ -0.86
NUP54-209ENST00000510569 FAM8A1Q9UBU6 413 aa9.66□□□□□ -0.86
NUP54-209ENST00000510569 FBXO24O75426 580 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 NTF4P34130 210 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 MPRIPQ6WCQ1 1025 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 STK11IPQ8N1F8 1099 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 GRIN3AQ8TCU5 1115 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 BCL7CQ8WUZ0 217 aaPredicted RBP9.65□□□□□ -0.86
NUP54-209ENST00000510569 MISP3Q96FF7 219 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 ACSBG1Q96GR2 724 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 DUSP23Q9BVJ7 150 aa9.65□□□□□ -0.86
NUP54-209ENST00000510569 RING1Q06587 406 aa9.64□□□□□ -0.87
NUP54-209ENST00000510569 RASIP1Q5U651 963 aa9.64□□□□□ -0.87
NUP54-209ENST00000510569 LLGL2Q6P1M3 1020 aa9.64□□□□□ -0.87
NUP54-209ENST00000510569 MKNK2Q9HBH9 465 aa9.64□□□□□ -0.87
NUP54-209ENST00000510569 LEFTY1O75610 366 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 USP17L7P0C7H9 530 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 LRRC14Q15048 493 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.63□□□□□ -0.87
NUP54-209ENST00000510569 PLD6Q8N2A8 252 aaKnown RBP9.63□□□□□ -0.87
NUP54-209ENST00000510569 FAM181AQ8N9Y4 354 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 NETO1Q8TDF5 533 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 FRMD6Q96NE9 622 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 GOLGA2P5Q9HBQ8 144 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 SLC5A6Q9Y289 635 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 U3KQE9 123 aa9.63□□□□□ -0.87
NUP54-209ENST00000510569 LDHBP07195 334 aaKnown RBP9.62□□□□□ -0.87
NUP54-209ENST00000510569 CELA3AP09093 270 aa9.62□□□□□ -0.87
NUP54-209ENST00000510569 ITGB5P18084 799 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 TXKP42681 527 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 PPM1JQ5JR12 505 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 PCNX4Q63HM2 1172 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 CYP8B1Q9UNU6 501 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 RNF114Q9Y508 228 aa9.61□□□□□ -0.87
NUP54-209ENST00000510569 LCE3BQ5TA77 95 aa9.6□□□□□ -0.87
NUP54-209ENST00000510569 ZBTB37Q5TC79 503 aa9.6□□□□□ -0.87
NUP54-209ENST00000510569 ZNF574Q6ZN55 896 aaPredicted RBP9.6□□□□□ -0.87
NUP54-209ENST00000510569 KRTAP1-3Q8IUG1 177 aa9.6□□□□□ -0.87
NUP54-209ENST00000510569 TOP6BLQ8N6T0 577 aa9.6□□□□□ -0.87
NUP54-209ENST00000510569 SSU72Q9NP77 194 aaKnown RBP9.6□□□□□ -0.87
NUP54-209ENST00000510569 FANCGO15287 622 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 CEACAM5P06731 702 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 GNA15P30679 374 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 OXCT1P55809 520 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 IFI16Q16666 785 aaKnown RBP9.59□□□□□ -0.87
NUP54-209ENST00000510569 SV2BQ7L1I2 683 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 SPRED2Q7Z698 418 aa9.59□□□□□ -0.87
NUP54-209ENST00000510569 DCDC2CA8MYV0 355 aa9.58□□□□□ -0.88
NUP54-209ENST00000510569 PRPF40AO75400 957 aaKnown RBP9.58□□□□□ -0.88
NUP54-209ENST00000510569 FAM214BQ7L5A3 538 aa9.58□□□□□ -0.88
NUP54-209ENST00000510569 UBE3DQ7Z6J8 389 aa9.58□□□□□ -0.88
NUP54-209ENST00000510569 PCDHA4Q9UN74 947 aa9.58□□□□□ -0.88
NUP54-209ENST00000510569 CSADQ9Y600 493 aa9.58□□□□□ -0.88
NUP54-209ENST00000510569 PRKCQQ04759 706 aa9.57□□□□□ -0.88
NUP54-209ENST00000510569 C12orf40Q86WS4 652 aa9.57□□□□□ -0.88
NUP54-209ENST00000510569 GAL3ST3Q96A11 431 aa9.57□□□□□ -0.88
NUP54-209ENST00000510569 VAV3Q9UKW4 847 aa9.57□□□□□ -0.88
NUP54-209ENST00000510569 JUNBP17275 347 aaPredicted RBP9.56□□□□□ -0.88
NUP54-209ENST00000510569 KCT2Q8NC54 265 aa9.56□□□□□ -0.88
NUP54-209ENST00000510569 HEXIM2Q96MH2 286 aaKnown RBP9.56□□□□□ -0.88
NUP54-209ENST00000510569 TNKS2Q9H2K2 1166 aa9.56□□□□□ -0.88
NUP54-209ENST00000510569 TTF2Q9UNY4 1162 aaKnown RBP9.56□□□□□ -0.88
NUP54-209ENST00000510569 PLAGL2Q9UPG8 496 aa9.56□□□□□ -0.88
NUP54-209ENST00000510569 FUT4P22083 530 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 EIF4BP23588 611 aaKnown RBP9.55□□□□□ -0.88
NUP54-209ENST00000510569 FGD1P98174 961 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 BNIP3Q12983 259 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 PLCL1Q15111 1095 aa9.55□□□□□ -0.88
NUP54-209ENST00000510569 SND1Q7KZF4 910 aaKnown RBP eCLIP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms