RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 ENTPD3O75355 529 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 LDHCP07864 332 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 GSTO1P78417 241 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 SNAPC2Q13487 334 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 PICALMQ13492 652 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 TBC1D9Q6ZT07 1266 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 ZFPM1Q8IX07 1006 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 ERO1AQ96HE7 468 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 ZFYVE28Q9HCC9 887 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 TRIM17Q9Y577 477 aa22.06■■□□□ 1.12
SQSTM1-212ENST00000508284 LAMB1P07942 1786 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 MCAMP43121 646 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 SOX10P56693 466 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 PPATQ06203 517 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 PPIL2Q13356 520 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 LRP2BPQ9P2M1 347 aa22.05■■□□□ 1.12
SQSTM1-212ENST00000508284 GPR75-ASB3A0A0A6YYF3 556 aa22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 SP3Q02447 781 aa22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 FAM43AQ8N2R8 423 aa22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 NSUN4Q96CB9 384 aaKnown RBP22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 ZBTB40Q9NUA8 1239 aa22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 ZNF112Q9UJU3 913 aa22.04■■□□□ 1.12
SQSTM1-212ENST00000508284 CD99L2Q8TCZ2 262 aa22.03■■□□□ 1.12
SQSTM1-212ENST00000508284 CCDC136Q96JN2 1154 aa22.03■■□□□ 1.12
SQSTM1-212ENST00000508284 DBNDD2Q9BQY9 259 aa22.03■■□□□ 1.12
SQSTM1-212ENST00000508284 SNRKQ9NRH2 765 aa22.03■■□□□ 1.12
SQSTM1-212ENST00000508284 NOP58Q9Y2X3 529 aaKnown RBP22.03■■□□□ 1.12
SQSTM1-212ENST00000508284 CEP85Q6P2H3 762 aa22.02■■□□□ 1.12
SQSTM1-212ENST00000508284 OTOP1Q7RTM1 612 aa22.02■■□□□ 1.12
SQSTM1-212ENST00000508284 NOL10Q9BSC4 688 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-212ENST00000508284 DDX4Q9NQI0 724 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-212ENST00000508284 BTBD19C9JJ37 291 aa22.01■■□□□ 1.11
SQSTM1-212ENST00000508284 NOL9Q5SY16 702 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-212ENST00000508284 ZNF384Q8TF68 577 aa22.01■■□□□ 1.11
SQSTM1-212ENST00000508284 EFCC1Q9HA90 598 aa22.01■■□□□ 1.11
SQSTM1-212ENST00000508284 DDTLA6NHG4 134 aaPredicted RBP22■■□□□ 1.11
SQSTM1-212ENST00000508284 RHBDL3P58872 404 aa22■■□□□ 1.11
SQSTM1-212ENST00000508284 ARHGEF6Q15052 776 aa22■■□□□ 1.11
SQSTM1-212ENST00000508284 SH3BP5LQ7L8J4 393 aa22■■□□□ 1.11
SQSTM1-212ENST00000508284 ZCCHC17Q9NP64 241 aaKnown RBP22■■□□□ 1.11
SQSTM1-212ENST00000508284 RFX7Q2KHR2 1363 aa21.99■■□□□ 1.11
SQSTM1-212ENST00000508284 MAP4K4O95819 1239 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-212ENST00000508284 CCDC8Q9H0W5 538 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-212ENST00000508284 PICK1Q9NRD5 415 aa21.99■■□□□ 1.11
SQSTM1-212ENST00000508284 B4GALNT3Q6L9W6 998 aa21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 NAA16Q6N069 864 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 ERC1Q8IUD2 1116 aa21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 SCYL3Q8IZE3 742 aa21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 KCNH4Q9UQ05 1017 aa21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 EXOC6BQ9Y2D4 811 aa21.98■■□□□ 1.11
SQSTM1-212ENST00000508284 PHF20L1A8MW92 1017 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 TLR2O60603 784 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 BAG3O95817 575 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 TEX11Q8IYF3 940 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 EAF2Q96CJ1 260 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 ZNF512BQ96KM6 892 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 DBNLQ9UJU6 430 aaKnown RBP21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 PTPN22Q9Y2R2 807 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 ATRNL1Q5VV63 1379 aa21.97■■□□□ 1.11
SQSTM1-212ENST00000508284 NPM3O75607 178 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 CYP2E1P05181 493 aaPredicted RBP21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 ZAP70P43403 619 aa21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 KIF22Q14807 665 aa21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 HSP90AB4PQ58FF6 505 aa21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 ANKRD23Q86SG2 305 aa21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 TLR7Q9NYK1 1049 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 ZHX2Q9Y6X8 837 aa21.96■■□□□ 1.11
SQSTM1-212ENST00000508284 DOCK2Q92608 1830 aa21.95■■□□□ 1.1
SQSTM1-212ENST00000508284 PDHXO00330 501 aa21.95■■□□□ 1.1
SQSTM1-212ENST00000508284 CXCL11O14625 94 aa21.95■■□□□ 1.1
SQSTM1-212ENST00000508284 MAP3K10Q02779 954 aa21.95■■□□□ 1.1
SQSTM1-212ENST00000508284 OSBPL5Q9H0X9 879 aaPredicted RBP21.95■■□□□ 1.1
SQSTM1-212ENST00000508284 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.95■■□□□ 1.16e-7■□□□□ 10.6
SQSTM1-212ENST00000508284 AATFQ9NY61 560 aaKnown RBP eCLIP21.95■■□□□ 1.11e-6■□□□□ 10.1
SQSTM1-212ENST00000508284 CTNND1O60716 968 aaKnown RBP21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 SLURP2P0DP57 97 aa21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 PLCG2P16885 1265 aa21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 PTPRAP18433 802 aa21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 SH3RF3Q8TEJ3 882 aaPredicted RBP21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 PCDHB15Q9Y5E8 787 aa21.94■■□□□ 1.1
SQSTM1-212ENST00000508284 AACSQ86V21 672 aa21.93■■□□□ 1.1
SQSTM1-212ENST00000508284 FAM196BA6NMK8 535 aa21.92■■□□□ 1.1
SQSTM1-212ENST00000508284 TBC1D12O60347 775 aa21.92■■□□□ 1.1
SQSTM1-212ENST00000508284 IGSF3O75054 1194 aa21.92■■□□□ 1.1
SQSTM1-212ENST00000508284 HMMRO75330 724 aa21.92■■□□□ 1.1
SQSTM1-212ENST00000508284 RPAP2Q8IXW5 612 aaPredicted RBP21.92■■□□□ 1.1
SQSTM1-212ENST00000508284 APBB1O00213 710 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 IDH1O75874 414 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 CAP1Q01518 475 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 HDAC1Q13547 482 aaPredicted RBP21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 CENPQQ7L2Z9 268 aaPredicted RBP21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 FASTKD5Q7L8L6 764 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 RHPN1Q8TCX5 695 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 IL1RAPL2Q9NP60 686 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 PIH1D3Q9NQM4 214 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 CPA4Q9UI42 421 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 AFG3L2Q9Y4W6 797 aa21.91■■□□□ 1.1
SQSTM1-212ENST00000508284 ECM2O94769 699 aaPredicted RBP21.9■■□□□ 1.1
SQSTM1-212ENST00000508284 PPP4CP60510 307 aa21.9■■□□□ 1.1
SQSTM1-212ENST00000508284 LACTBP83111 547 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms