RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 REC114Q7Z4M0 266 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 MCF2L2Q86YR7 1114 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 CPLX3Q8WVH0 158 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 RUSC1Q9BVN2 902 aa6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 MRPL18Q9H0U6 180 aaKnown RBP6.33□□□□□ -1.4
HMGB1P28-201ENST00000507778 MEGF11A6BM72 1044 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 GFRA2O00451 464 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 WISP1O95388 367 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 INPP5AQ14642 412 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 NUTM2GQ5VZR2 741 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 LRFN4Q6PJG9 635 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 KIAA1211Q6ZU35 1233 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 DHX38Q92620 1227 aaKnown RBP6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 ELMO3Q96BJ8 720 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 ARMC5Q96C12 935 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 PLPPR2Q96GM1 343 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 SCARF2Q96GP6 870 aaPredicted RBP6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 WDR18Q9BV38 432 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 TMPRSS13Q9BYE2 586 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 BRMS1Q9HCU9 246 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 STRIP2Q9ULQ0 834 aa6.32□□□□□ -1.4
HMGB1P28-201ENST00000507778 DCDC2CA8MYV0 355 aa6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 CDK8P49336 464 aa6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 GRIK4Q16099 956 aa6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 ZC3H12AQ5D1E8 599 aaKnown RBP6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 WIPI1Q5MNZ9 446 aaPredicted RBP6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 REXO1Q8N1G1 1221 aaKnown RBP6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 RNF208Q9H0X6 261 aa6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 CYP4F12Q9HCS2 524 aa6.31□□□□□ -1.4
HMGB1P28-201ENST00000507778 SPATA31C1P0DKV0 1188 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 SELPP16109 830 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 ID3Q02535 119 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 CLCQ05315 142 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 AKAP4Q5JQC9 854 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 GK5Q6ZS86 529 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 CYFIP1Q7L576 1253 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 C12orf40Q86WS4 652 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 TMEM130Q8N3G9 435 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 SMG8Q8ND04 991 aaKnown RBP6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 FERD3LQ96RJ6 166 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 EHMT1Q9H9B1 1298 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 SUGCTQ9HAC7 445 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 PPT2Q9UMR5 302 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 POLR3KQ9Y2Y1 108 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 PCDHB14Q9Y5E9 798 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 CSADQ9Y600 493 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 TACC3Q9Y6A5 838 aa6.3□□□□□ -1.4
HMGB1P28-201ENST00000507778 GRIN3BO60391 1043 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 STK10O94804 968 aaKnown RBP6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 ATE1O95260 518 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 IMPDH2P12268 514 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 ERVK-24P63145 666 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 FBXW10Q5XX13 1052 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 SHISA2Q6UWI4 295 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 C12orf50Q8NA57 414 aaPredicted RBP6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 LENG1Q96BZ8 264 aaPredicted RBP6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 CRBNQ96SW2 442 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 SRRTQ9BXP5 876 aaKnown RBP6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 PICK1Q9NRD5 415 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 USP21Q9UK80 565 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 PPP1R9AQ9ULJ8 1098 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 PCDHGC5Q9Y5F6 944 aa6.29□□□□□ -1.4
HMGB1P28-201ENST00000507778 PRAMEF27A3QJZ7 478 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 C9orf172C9J069 976 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 F8W735 103 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 TMPRSS2O15393 492 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 APBA3O96018 575 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 EIF6P56537 245 aaKnown RBP6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 SOX4Q06945 474 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 PDE4BQ07343 736 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 RBL2Q08999 1139 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 FDX2Q6P4F2 183 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 CCDC81Q6ZN84 652 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 NACC1Q96RE7 527 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 HIRIP3Q9BW71 556 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 CRIM1Q9NZV1 1036 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 HIF3AQ9Y2N7 669 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 MRVI1Q9Y6F6 885 aa6.28□□□□□ -1.4
HMGB1P28-201ENST00000507778 PRR36Q9H6K5 1346 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 RNF225M0QZC1 329 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 FANCGO15287 622 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 ADH5P11766 374 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 PLCG1P19174 1290 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 NRG1Q02297 640 aaPredicted RBP6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 RING1Q06587 406 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 KCNMA1Q12791 1236 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 MLECQ14165 292 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 SOGA3Q5TF21 947 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 ANKRD34AQ69YU3 496 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 AGGF1Q8N302 714 aaeCLIP6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 ANAPC16Q96DE5 110 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 DNAJC2Q99543 621 aaKnown RBP6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 WNT10AQ9GZT5 417 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 ATXN3LQ9H3M9 355 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 AKTIPQ9H8T0 292 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 DISC1Q9NRI5 854 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 ZNRF3Q9ULT6 936 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 AP4E1Q9UPM8 1137 aa6.27□□□□□ -1.41
HMGB1P28-201ENST00000507778 CORINQ9Y5Q5 1042 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms