RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 NR1I3Q14994 352 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 APPBP2Q92624 585 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 GJB4Q9NTQ9 266 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 RAI14Q9P0K7 980 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 PARP4Q9UKK3 1724 aaKnown RBP20.31■□□□□ 0.84
NUP54-205ENST00000507257 GLI3P10071 1580 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 A0A1B0GUL7 405 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 H3BQF6 201 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 EIF3JO75822 258 aaKnown RBP20.31■□□□□ 0.84
NUP54-205ENST00000507257 SRLQ86TD4 932 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 FAM177A1Q8N128 213 aaPredicted RBP20.31■□□□□ 0.84
NUP54-205ENST00000507257 CCDC12Q8WUD4 166 aaPredicted RBP20.31■□□□□ 0.84
NUP54-205ENST00000507257 MAN1B1Q9UKM7 699 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 ANGEL1Q9UNK9 670 aaKnown RBP20.31■□□□□ 0.84
NUP54-205ENST00000507257 STK36Q9NRP7 1315 aa20.31■□□□□ 0.84
NUP54-205ENST00000507257 A0A1B0GTH6 734 aa20.3■□□□□ 0.84
NUP54-205ENST00000507257 ERCC5P28715 1186 aaPredicted RBP20.3■□□□□ 0.84
NUP54-205ENST00000507257 MORC3Q14149 939 aa20.3■□□□□ 0.84
NUP54-205ENST00000507257 CTR9Q6PD62 1173 aa20.3■□□□□ 0.84
NUP54-205ENST00000507257 KRI1Q8N9T8 703 aaKnown RBP20.3■□□□□ 0.84
NUP54-205ENST00000507257 NFE2L3Q9Y4A8 694 aa20.3■□□□□ 0.84
NUP54-205ENST00000507257 VGLL3A8MV65 326 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 ZNF213O14771 459 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 PHKG2P15735 406 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 CDC27P30260 824 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 POSTNQ15063 836 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 GBP3Q9H0R5 595 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 ANKZF1Q9H8Y5 726 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 MST1RQ04912 1400 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 AKR1B15C9JRZ8 316 aaPredicted RBP20.29■□□□□ 0.84
NUP54-205ENST00000507257 ATP5J2-PTCD1G3V325 749 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 PTCD1O75127 700 aaKnown RBP20.29■□□□□ 0.84
NUP54-205ENST00000507257 FECHP22830 423 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 TTC39AQ5SRH9 613 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 KANK3Q6NY19 840 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 PDILTQ8N807 584 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 ZNF579Q8NAF0 562 aaKnown RBP20.29■□□□□ 0.84
NUP54-205ENST00000507257 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.29■□□□□ 0.84
NUP54-205ENST00000507257 WDR17Q8IZU2 1322 aa20.29■□□□□ 0.84
NUP54-205ENST00000507257 LMAN1P49257 510 aa20.28■□□□□ 0.84
NUP54-205ENST00000507257 METAP2P50579 478 aaKnown RBP eCLIP20.28■□□□□ 0.84
NUP54-205ENST00000507257 MRPL44Q9H9J2 332 aaKnown RBP20.28■□□□□ 0.84
NUP54-205ENST00000507257 L1RE1Q9UN81 338 aa20.28■□□□□ 0.84
NUP54-205ENST00000507257 ADGRG1Q9Y653 693 aa20.28■□□□□ 0.84
NUP54-205ENST00000507257 SH2B2O14492 632 aaPredicted RBP20.27■□□□□ 0.84
NUP54-205ENST00000507257 KIF5CO60282 957 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 ADKP55263 362 aaKnown RBP20.27■□□□□ 0.84
NUP54-205ENST00000507257 HAND2P61296 217 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 LEKR1Q6ZMV7 388 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 SPATA20Q8TB22 786 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 ATRNO75882 1429 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 TRPM3Q9HCF6 1732 aaPredicted RBP20.27■□□□□ 0.84
NUP54-205ENST00000507257 RGPD5Q99666 1765 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 NID2Q14112 1375 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 RASGRP2Q7LDG7 609 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 TTC5Q8N0Z6 440 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 CCDC51Q96ER9 411 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 TMEM87BQ96K49 555 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 CLIC6Q96NY7 704 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 TRERF1Q96PN7 1200 aa20.27■□□□□ 0.84
NUP54-205ENST00000507257 CWC25Q9NXE8 425 aaPredicted RBP20.27■□□□□ 0.84
NUP54-205ENST00000507257 CEBPAP49715 358 aaPredicted RBP20.26■□□□□ 0.83
NUP54-205ENST00000507257 PLCD1P51178 756 aa20.26■□□□□ 0.83
NUP54-205ENST00000507257 FMR1Q06787 632 aaKnown RBP eCLIP20.26■□□□□ 0.83
NUP54-205ENST00000507257 TRDNQ13061 729 aa20.26■□□□□ 0.83
NUP54-205ENST00000507257 TRIM29Q14134 588 aa20.26■□□□□ 0.83
NUP54-205ENST00000507257 NTRK3Q16288 839 aa20.26■□□□□ 0.83
NUP54-205ENST00000507257 MKRN1Q9UHC7 482 aaKnown RBP20.26■□□□□ 0.83
NUP54-205ENST00000507257 AKAP2Q9Y2D5 859 aa20.26■□□□□ 0.83
NUP54-205ENST00000507257 RRP15Q9Y3B9 282 aaKnown RBP20.26■□□□□ 0.83
NUP54-205ENST00000507257 SEMA3EO15041 775 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 PTPREP23469 700 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 PBX1P40424 430 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 APOA5Q6Q788 366 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 SGMS1Q86VZ5 419 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 RAPGEF4Q8WZA2 1011 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 MYO1AQ9UBC5 1043 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 WHAMMP3Q1A5X7 153 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 WASHC4Q2M389 1173 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 LRRC24Q50LG9 513 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 FAM71BQ8TC56 605 aa20.25■□□□□ 0.83
NUP54-205ENST00000507257 CCDC9Q9Y3X0 531 aaKnown RBP20.25■□□□□ 0.83
NUP54-205ENST00000507257 KARSQ15046 597 aaKnown RBP20.24■□□□□ 0.83
NUP54-205ENST00000507257 APTXQ7Z2E3 356 aaKnown RBP20.24■□□□□ 0.83
NUP54-205ENST00000507257 IFNL2Q8IZJ0 200 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 WASF1Q92558 559 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 AIFM3Q96NN9 605 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 DESI2Q9BSY9 194 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 PDE11AQ9HCR9 933 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 CEP126Q9P2H0 1117 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 TTF2Q9UNY4 1162 aaKnown RBP20.24■□□□□ 0.83
NUP54-205ENST00000507257 AXIN2Q9Y2T1 843 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 PKD1L3Q7Z443 1732 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 ITIH6Q6UXX5 1313 aa20.24■□□□□ 0.83
NUP54-205ENST00000507257 GPAA1O43292 621 aa20.23■□□□□ 0.83
NUP54-205ENST00000507257 IARSP41252 1262 aaKnown RBP20.23■□□□□ 0.83
NUP54-205ENST00000507257 NOM1Q5C9Z4 860 aaKnown RBP20.23■□□□□ 0.83
NUP54-205ENST00000507257 ESCO1Q5FWF5 840 aa20.23■□□□□ 0.83
NUP54-205ENST00000507257 STK11IPQ8N1F8 1099 aa20.23■□□□□ 0.83
NUP54-205ENST00000507257 DCAF5Q96JK2 942 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms