RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 ANTXR1Q9H6X2 564 aa20.53■□□□□ 0.88
SYNE4-207ENST00000505054 ELP3Q9H9T3 547 aa20.53■□□□□ 0.88
SYNE4-207ENST00000505054 KIAA0100Q14667 2235 aaKnown RBP20.53■□□□□ 0.88
SYNE4-207ENST00000505054 GAKO14976 1311 aa20.53■□□□□ 0.88
SYNE4-207ENST00000505054 TSHZ3Q63HK5 1081 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 NSUN4Q96CB9 384 aaKnown RBP20.52■□□□□ 0.88
SYNE4-207ENST00000505054 OPTNQ96CV9 577 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 PTPN18Q99952 460 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 TDRD3Q9H7E2 651 aaKnown RBP20.52■□□□□ 0.88
SYNE4-207ENST00000505054 ECHDC1Q9NTX5 307 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 RAI14Q9P0K7 980 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 LRP2BPQ9P2M1 347 aa20.52■□□□□ 0.88
SYNE4-207ENST00000505054 SALL3Q9BXA9 1300 aa20.52■□□□□ 0.87
SYNE4-207ENST00000505054 POTEFA5A3E0 1075 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 SP3Q02447 781 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 B4GALNT3Q6L9W6 998 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 ARMC5Q96C12 935 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 TEPSINQ96N21 525 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 DNAJC2Q99543 621 aaKnown RBP20.51■□□□□ 0.87
SYNE4-207ENST00000505054 BOLA2Q9H3K6 86 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 EFCC1Q9HA90 598 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 MAST2Q6P0Q8 1798 aa20.51■□□□□ 0.87
SYNE4-207ENST00000505054 TNNI2P48788 182 aa20.5■□□□□ 0.87
SYNE4-207ENST00000505054 EDC3Q96F86 508 aaKnown RBP20.5■□□□□ 0.87
SYNE4-207ENST00000505054 MS4A4AQ96JQ5 239 aa20.5■□□□□ 0.87
SYNE4-207ENST00000505054 HAUS7Q99871 368 aa20.5■□□□□ 0.87
SYNE4-207ENST00000505054 BRCA2P51587 3418 aa20.5■□□□□ 0.87
SYNE4-207ENST00000505054 MROH7-TTC4A0A0A0MT08 1334 aa20.5■□□□□ 0.87
SYNE4-207ENST00000505054 GOLIM4O00461 696 aa20.49■□□□□ 0.87
SYNE4-207ENST00000505054 NUCB1Q02818 461 aa20.49■□□□□ 0.87
SYNE4-207ENST00000505054 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.49■□□□□ 0.87
SYNE4-207ENST00000505054 CDAN1Q8IWY9 1227 aa20.49■□□□□ 0.87
SYNE4-207ENST00000505054 FAM163AQ96GL9 167 aaPredicted RBP20.49■□□□□ 0.87
SYNE4-207ENST00000505054 GPATCH3Q96I76 525 aa20.49■□□□□ 0.87
SYNE4-207ENST00000505054 LNPKQ9C0E8 428 aa20.49■□□□□ 0.87
SYNE4-207ENST00000505054 ZBTB47Q9UFB7 747 aaPredicted RBP20.49■□□□□ 0.87
SYNE4-207ENST00000505054 TCP10L2B9ZVM9 353 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 MX1P20591 662 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 VGLL4Q14135 290 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 SLF2Q8IX21 1173 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.48■□□□□ 0.87
SYNE4-207ENST00000505054 BRI3BPQ8WY22 251 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 TMEM39BQ9GZU3 492 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 PAG1Q9NWQ8 432 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 TTC41PQ6P2S7 1318 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 DOCK2Q92608 1830 aa20.48■□□□□ 0.87
SYNE4-207ENST00000505054 IDH1O75874 414 aaKnown RBP20.47■□□□□ 0.87
SYNE4-207ENST00000505054 GTF2A2P52657 109 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 CACNB3P54284 484 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 GSTO1P78417 241 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 TAF1CQ15572 869 aaPredicted RBP20.47■□□□□ 0.87
SYNE4-207ENST00000505054 CDC42EP5Q6NZY7 148 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 CHD1LQ86WJ1 897 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 PI4K2BQ8TCG2 481 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 CSADQ9Y600 493 aa20.47■□□□□ 0.87
SYNE4-207ENST00000505054 ZSWIM8A7E2V4 1837 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 MYO5AQ9Y4I1 1855 aaKnown RBP20.46■□□□□ 0.87
SYNE4-207ENST00000505054 CCL15-CCL14A0A0B4J2E2 113 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 IGSF3O75054 1194 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 BTDP43251 543 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 MAP3K9P80192 1104 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 CAP1Q01518 475 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 ARHGEF6Q15052 776 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 TTF1Q15361 905 aaPredicted RBP20.46■□□□□ 0.87
SYNE4-207ENST00000505054 CCL15Q16663 113 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 NAA16Q6N069 864 aaPredicted RBP20.46■□□□□ 0.87
SYNE4-207ENST00000505054 ADGRA1Q86SQ6 560 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 CNKSR2Q8WXI2 1034 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 ZFYVE28Q9HCC9 887 aa20.46■□□□□ 0.87
SYNE4-207ENST00000505054 MYH2Q9UKX2 1941 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 GPR75-ASB3A0A0A6YYF3 556 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 LDHCP07864 332 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 OTUD5Q96G74 571 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 STAP2Q9UGK3 403 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 RFX7Q2KHR2 1363 aa20.45■□□□□ 0.86
SYNE4-207ENST00000505054 RPAP1Q9BWH6 1393 aaPredicted RBP20.45■□□□□ 0.86
SYNE4-207ENST00000505054 SPDYE5A6NIY4 337 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 NEFLP07196 543 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 RHBDL3P58872 404 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 MAP3K12Q12852 859 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 MAGEB6Q8N7X4 407 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 ZNF333Q96JL9 665 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 USP40Q9NVE5 1235 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 TMOD2Q9NZR1 351 aa20.44■□□□□ 0.86
SYNE4-207ENST00000505054 GLRX3O76003 335 aaKnown RBP20.43■□□□□ 0.86
SYNE4-207ENST00000505054 PDE1AP54750 535 aa20.43■□□□□ 0.86
SYNE4-207ENST00000505054 NFIAQ12857 509 aa20.43■□□□□ 0.86
SYNE4-207ENST00000505054 FKBP1CQ5VVH2 108 aa20.43■□□□□ 0.86
SYNE4-207ENST00000505054 FAM43AQ8N2R8 423 aa20.43■□□□□ 0.86
SYNE4-207ENST00000505054 ERC2O15083 957 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 WDHD1O75717 1129 aaPredicted RBP20.42■□□□□ 0.86
SYNE4-207ENST00000505054 PDE6AP16499 860 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 CYP7A1P22680 504 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 SLC9C1Q4G0N8 1177 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 HABP4Q5JVS0 413 aaKnown RBP20.42■□□□□ 0.86
SYNE4-207ENST00000505054 HOOK2Q96ED9 719 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 TMEM106CQ9BVX2 250 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 ZCCHC17Q9NP64 241 aaKnown RBP20.42■□□□□ 0.86
SYNE4-207ENST00000505054 PTCH2Q9Y6C5 1203 aa20.42■□□□□ 0.86
SYNE4-207ENST00000505054 SNCAIPQ9Y6H5 919 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms