RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ATP2B4P23634 1241 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 SCRN1Q12765 414 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 ANO1Q5XXA6 986 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 ZNF772Q68DY9 489 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-207ENST00000504761 TBC1D22AQ8WUA7 517 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 RBM10P98175 930 aaKnown RBP16.11■□□□□ 0.17
TCOF1-207ENST00000504761 TNIP1Q15025 636 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 ZFYVE27Q5T4F4 411 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 CCDC70Q6NSX1 233 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 NARFQ9UHQ1 456 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 COL15A1P39059 1388 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 ECM2O94769 699 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-207ENST00000504761 PDIA3P30101 505 aaKnown RBP16.11■□□□□ 0.17
TCOF1-207ENST00000504761 NECTIN1Q15223 517 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 CAGE1Q8TC20 777 aa16.11■□□□□ 0.17
TCOF1-207ENST00000504761 MMP10P09238 476 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 STX17P56962 302 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 SCARF1Q14162 830 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 RBM28Q9NW13 759 aaKnown RBP16.1■□□□□ 0.17
TCOF1-207ENST00000504761 XDHP47989 1333 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 SPATA31A1Q5TZJ5 1347 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 PRKCSHP14314 528 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-207ENST00000504761 BTDP43251 543 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 RBSNQ9H1K0 784 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 DBNDD1Q9H9R9 158 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 TMEM63CQ9P1W3 806 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 SMARCC2Q8TAQ2 1214 aa16.1■□□□□ 0.17
TCOF1-207ENST00000504761 RRAGBQ5VZM2 374 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 KRI1Q8N9T8 703 aaKnown RBP16.09■□□□□ 0.17
TCOF1-207ENST00000504761 FER1L4A9Z1Z3 1794 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 BMP15O95972 392 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 CYP2E1P05181 493 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-207ENST00000504761 KANK3Q6NY19 840 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 ZNF274Q96GC6 653 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-207ENST00000504761 BCS1LQ9Y276 419 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 JAKMIP3Q5VZ66 844 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 FLAD1Q8NFF5 587 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 TTC12Q9H892 705 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-207ENST00000504761 MST1RQ04912 1400 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 PFKFB2O60825 505 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 GOLGA8HP0CJ92 632 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 LIG1P18858 919 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 GNA11P29992 359 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 CCDC112Q8NEF3 446 aa16.09■□□□□ 0.17
TCOF1-207ENST00000504761 COL3A1P02461 1466 aaPredicted RBP16.08■□□□□ 0.17
TCOF1-207ENST00000504761 PRKG1Q13976 671 aa16.08■□□□□ 0.17
TCOF1-207ENST00000504761 TEKT1Q969V4 418 aa16.08■□□□□ 0.17
TCOF1-207ENST00000504761 ITPK1Q13572 414 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 INCENPQ9NQS7 918 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 RGS12O14924 1447 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 MTIF2P46199 727 aaKnown RBP16.08■□□□□ 0.16
TCOF1-207ENST00000504761 RILPL1Q5EBL4 403 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 ATG9AQ7Z3C6 839 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 CCDC186Q7Z3E2 898 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 GOLGA6L1Q8N7Z2 621 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 FANCBQ8NB91 859 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 CERKQ8TCT0 537 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 C16orf45Q96MC5 204 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-207ENST00000504761 USP28Q96RU2 1077 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 SEPT11Q9NVA2 429 aaKnown RBP16.08■□□□□ 0.16
TCOF1-207ENST00000504761 MINPP1Q9UNW1 487 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 IBSPP21815 317 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-207ENST00000504761 FCHSD1Q86WN1 690 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 PDCL3Q9H2J4 239 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 TMX1Q9H3N1 280 aa16.08■□□□□ 0.16
TCOF1-207ENST00000504761 BSDC1Q9NW68 430 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-207ENST00000504761 MATR3P43243 847 aaKnown RBP eCLIP16.07■□□□□ 0.16
TCOF1-207ENST00000504761 AMPD3Q01432 767 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 FAM160A1Q05DH4 1040 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 TRIM28Q13263 835 aaKnown RBP16.07■□□□□ 0.16
TCOF1-207ENST00000504761 ZSCAN10Q96SZ4 725 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-207ENST00000504761 MYO5BQ9ULV0 1848 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 JCADQ9P266 1359 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 SPDYE3A6NKU9 549 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 PPEF1O14829 653 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-207ENST00000504761 DTHD1Q6ZMT9 781 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 ARPP21Q9UBL0 812 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-207ENST00000504761 LEMD3Q9Y2U8 911 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 SLC1A4P43007 532 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 ASIC1P78348 528 aa16.07■□□□□ 0.16
TCOF1-207ENST00000504761 MEGF6O75095 1541 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 UBASH3AP57075 661 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 PLS1Q14651 629 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 TCERG1LQ5VWI1 586 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 TRIM47Q96LD4 638 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 CLEC11AQ9Y240 323 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 PRDX5P30044 214 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 UVSSAQ2YD98 709 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 RABL6Q3YEC7 729 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-207ENST00000504761 ARHGAP29Q52LW3 1261 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 NUP88Q99567 741 aaPredicted RBP16.06■□□□□ 0.16
TCOF1-207ENST00000504761 N4BP3O15049 544 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 CCP110O43303 1012 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 SYCP1Q15431 976 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 STAMQ92783 540 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 ARHGAP23Q9P227 1491 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 BTBD18B2RXH4 712 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 BBOX1O75936 387 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 DLGAP5Q15398 846 aa16.06■□□□□ 0.16
TCOF1-207ENST00000504761 OVOS2A0A0G2JMS6 1433 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms