RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 NBPF11Q86T75 865 aa11.42□□□□□ -0.58
CLIP1-204ENST00000501271 BPIFA3Q9BQP9 254 aa11.42□□□□□ -0.58
CLIP1-204ENST00000501271 SLC12A7Q9Y666 1083 aa11.42□□□□□ -0.58
CLIP1-204ENST00000501271 AHDC1Q5TGY3 1603 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-204ENST00000501271 CICQ96RK0 1608 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-204ENST00000501271 U2AF2P26368 475 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 GNL2Q13823 731 aaKnown RBP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 CCDC152Q4G0S7 254 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 SHC4Q6S5L8 630 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 MTERF4Q7Z6M4 381 aaKnown RBP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 SLC26A6Q9BXS9 759 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 BCL2L12Q9HB09 334 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 HPSEQ9Y251 543 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 MYH6P13533 1939 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 LOC102724428A0A0B4J2F2 783 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 PPP6R2O75170 966 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 TDO2P48775 406 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 SIK1P57059 783 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 NLRP12P59046 1061 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 CCZ1BP86790 482 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 CCZ1P86791 482 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 ZRSR1Q15695 479 aaKnown RBP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 RRP12Q5JTH9 1297 aaKnown RBP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 MFSD6Q6ZSS7 791 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 MIGA1Q8NAN2 632 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 ARID3AQ99856 593 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 ZKSCAN3Q9BRR0 538 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 CNNM2Q9H8M5 875 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 NIP7Q9Y221 180 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLIP1-204ENST00000501271 SLC4A4Q9Y6R1 1079 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 PNPLA7Q6ZV29 1317 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 STK36Q9NRP7 1315 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 NID2Q14112 1375 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 RTL9Q8NET4 1388 aa11.41□□□□□ -0.58
CLIP1-204ENST00000501271 CCDC69A6NI79 296 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 USP27XA6NNY8 438 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 GUCY1A2P33402 732 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 IGHMBP2P38935 993 aaKnown RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 SYKP43405 635 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 RBM6P78332 1123 aaKnown RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 CHRNDQ07001 517 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 DDB1Q16531 1140 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 GLIPR1L2Q4G1C9 344 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 PARP10Q53GL7 1025 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 STK11IPQ8N1F8 1099 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 STAG1Q8WVM7 1258 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 CLIC6Q96NY7 704 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 KRT23Q9C075 422 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 COL5A3P25940 1745 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 NEMFO60524 1076 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 FMNL1O95466 1100 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 TNNT1P13805 278 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 SSRP1Q08945 709 aaKnown RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 TRIM29Q14134 588 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 NCAPHQ15003 741 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 ADGRA1Q86SQ6 560 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 TOMM22Q9NS69 142 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 IQSEC3Q9UPP2 1182 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 SPATA31A1Q5TZJ5 1347 aa11.4□□□□□ -0.58
CLIP1-204ENST00000501271 BAZ2AQ9UIF9 1905 aaKnown RBP11.4□□□□□ -0.58
CLIP1-204ENST00000501271 MYH2Q9UKX2 1941 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 CACNA1SQ13698 1873 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 COL1A1P02452 1464 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-204ENST00000501271 SKILP12757 684 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 IFNAR1P17181 557 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 TPD52L1Q16890 204 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-204ENST00000501271 ISM2Q6H9L7 571 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 MARCH10Q8NA82 808 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-204ENST00000501271 TIGD1Q96MW7 591 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 XPO4Q9C0E2 1151 aaKnown RBP11.39□□□□□ -0.59
CLIP1-204ENST00000501271 FAM237AA0A1B0GTK4 181 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 CTIFO43310 598 aaKnown RBP11.39□□□□□ -0.59
CLIP1-204ENST00000501271 GNAT2P19087 354 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 RESP18Q5W5W9 173 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 JMYQ8N9B5 988 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 NACAP1Q9BZK3 213 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 IFNKQ9P0W0 207 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 LRP2BPQ9P2M1 347 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 TUBE1Q9UJT0 475 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 SCN7AQ01118 1682 aa11.39□□□□□ -0.59
CLIP1-204ENST00000501271 WTIPA6NIX2 430 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-204ENST00000501271 ADAMTS2O95450 1211 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 PNOCQ13519 176 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 WTAPQ15007 396 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 RTN1Q16799 776 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 CMTR1Q8N1G2 835 aaKnown RBP11.38□□□□□ -0.59
CLIP1-204ENST00000501271 OSBPL5Q9H0X9 879 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-204ENST00000501271 HSD3B7Q9H2F3 369 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.38□□□□□ -0.59
CLIP1-204ENST00000501271 KCNJ14Q9UNX9 436 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 SMTNL1A8MU46 457 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 BTBD18B2RXH4 712 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 SMIM22K7EJ46 135 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 SMC2O95347 1197 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 MMP1P03956 469 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 METTL16Q86W50 562 aaKnown RBP11.38□□□□□ -0.59
CLIP1-204ENST00000501271 NOSTRINQ8IVI9 506 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 CCDC82Q8N4S0 544 aa11.38□□□□□ -0.59
CLIP1-204ENST00000501271 SDR42E1Q8WUS8 393 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms