RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 GPBAR1Q8TDU6 330 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 WDR89Q96FK6 387 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-207ENST00000495817 C8orf37Q96NL8 207 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 ACSS3Q9H6R3 686 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 FAM105AQ9NUU6 356 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 PPP1R9AQ9ULJ8 1098 aa9.37□□□□□ -0.91
CCDC39-207ENST00000495817 ERVK-24P63145 666 aa9.36□□□□□ -0.91
CCDC39-207ENST00000495817 HDLBPQ00341 1268 aaKnown RBP9.36□□□□□ -0.91
CCDC39-207ENST00000495817 CDPF1Q6NVV7 123 aa9.36□□□□□ -0.91
CCDC39-207ENST00000495817 FBLIM1Q8WUP2 373 aa9.36□□□□□ -0.91
CCDC39-207ENST00000495817 PIDD1Q9HB75 910 aa9.36□□□□□ -0.91
CCDC39-207ENST00000495817 RAB6AP20340 208 aa9.35□□□□□ -0.91
CCDC39-207ENST00000495817 CPSF6Q16630 551 aaKnown RBP eCLIP9.35□□□□□ -0.91
CCDC39-207ENST00000495817 ZC3H12AQ5D1E8 599 aaKnown RBP9.35□□□□□ -0.91
CCDC39-207ENST00000495817 GRIN3AQ8TCU5 1115 aa9.35□□□□□ -0.91
CCDC39-207ENST00000495817 FANCD2OSQ96PS1 177 aa9.35□□□□□ -0.91
CCDC39-207ENST00000495817 SEMA6CQ9H3T2 930 aa9.35□□□□□ -0.91
CCDC39-207ENST00000495817 LMNB1P20700 586 aa9.34□□□□□ -0.91
CCDC39-207ENST00000495817 LIG3P49916 1009 aa9.34□□□□□ -0.91
CCDC39-207ENST00000495817 FANCCQ00597 558 aa9.34□□□□□ -0.91
CCDC39-207ENST00000495817 GIMAP7Q8NHV1 300 aa9.34□□□□□ -0.91
CCDC39-207ENST00000495817 RASIP1Q5U651 963 aa9.33□□□□□ -0.92
CCDC39-207ENST00000495817 AGMOQ6ZNB7 445 aa9.33□□□□□ -0.92
CCDC39-207ENST00000495817 METTL16Q86W50 562 aaKnown RBP9.33□□□□□ -0.92
CCDC39-207ENST00000495817 RNF34Q969K3 372 aa9.33□□□□□ -0.92
CCDC39-207ENST00000495817 RNF112Q9ULX5 631 aa9.33□□□□□ -0.92
CCDC39-207ENST00000495817 ERCC5P28715 1186 aaPredicted RBP9.32□□□□□ -0.92
CCDC39-207ENST00000495817 ZNF76P36508 570 aa9.32□□□□□ -0.92
CCDC39-207ENST00000495817 ZC3H6P61129 1189 aaKnown RBP9.32□□□□□ -0.92
CCDC39-207ENST00000495817 ZMYM1Q5SVZ6 1142 aa9.32□□□□□ -0.92
CCDC39-207ENST00000495817 GAL3ST3Q96A11 431 aa9.32□□□□□ -0.92
CCDC39-207ENST00000495817 DISC1Q9NRI5 854 aa9.32□□□□□ -0.92
CCDC39-207ENST00000495817 NFICP08651 508 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 PWP1Q13610 501 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 NFKBIBQ15653 356 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 DIEXFQ68CQ4 756 aaKnown RBP9.31□□□□□ -0.92
CCDC39-207ENST00000495817 ZDHHC13Q8IUH4 622 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 RNF214Q8ND24 703 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 PRKAG2Q9UGJ0 569 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 PCDHA4Q9UN74 947 aa9.31□□□□□ -0.92
CCDC39-207ENST00000495817 SMYD4Q8IYR2 804 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-207ENST00000495817 METTL22Q9BUU2 404 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-207ENST00000495817 DAGLAQ9Y4D2 1042 aa9.3□□□□□ -0.92
CCDC39-207ENST00000495817 TTLL4Q14679 1199 aa9.29□□□□□ -0.92
CCDC39-207ENST00000495817 MPRIPQ6WCQ1 1025 aa9.29□□□□□ -0.92
CCDC39-207ENST00000495817 ZAR1Q86SH2 424 aa9.29□□□□□ -0.92
CCDC39-207ENST00000495817 NT5DC4Q86YG4 428 aa9.29□□□□□ -0.92
CCDC39-207ENST00000495817 MIR1-1HGQ9H1L0 117 aa9.29□□□□□ -0.92
CCDC39-207ENST00000495817 FANCGO15287 622 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 CYP27A1Q02318 531 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 RING1Q06587 406 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 RAD51AP2Q09MP3 1159 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 C9orf131Q5VYM1 1079 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 SEZ6L2Q6UXD5 910 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 HDXQ7Z353 690 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 CCDC84Q86UT8 332 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-207ENST00000495817 SHKBP1Q8TBC3 707 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 ELMO3Q96BJ8 720 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 MFSD14AQ96MC6 490 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 TGIF2Q9GZN2 237 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 SNCAIPQ9Y6H5 919 aa9.28□□□□□ -0.92
CCDC39-207ENST00000495817 IGSF3O75054 1194 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 MAP3K11Q16584 847 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 PHC3Q8NDX5 983 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 TBC1D32Q96NH3 1257 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 RSRP1Q9BUV0 290 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 PICK1Q9NRD5 415 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 ATG3Q9NT62 314 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 PCOLCE2Q9UKZ9 415 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 TACC3Q9Y6A5 838 aa9.27□□□□□ -0.93
CCDC39-207ENST00000495817 NEFMP07197 916 aa9.26□□□□□ -0.93
CCDC39-207ENST00000495817 HCLS1P14317 486 aaPredicted RBP9.26□□□□□ -0.93
CCDC39-207ENST00000495817 TFE3P19532 575 aaPredicted RBP9.26□□□□□ -0.93
CCDC39-207ENST00000495817 GRIK1P39086 918 aa9.26□□□□□ -0.93
CCDC39-207ENST00000495817 KCT2Q8NC54 265 aa9.26□□□□□ -0.93
CCDC39-207ENST00000495817 ISL2Q96A47 359 aa9.26□□□□□ -0.93
CCDC39-207ENST00000495817 DCDC2CA8MYV0 355 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 RNGTTO60942 597 aaKnown RBP9.25□□□□□ -0.93
CCDC39-207ENST00000495817 LRP8Q14114 963 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 NAALADL2Q58DX5 795 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 ZBTB37Q5TC79 503 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 INTS5Q6P9B9 1019 aaKnown RBP9.25□□□□□ -0.93
CCDC39-207ENST00000495817 LRFN4Q6PJG9 635 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 FBXL6Q8N531 539 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 GATA6Q92908 595 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 C1GALT1Q9NS00 363 aa9.25□□□□□ -0.93
CCDC39-207ENST00000495817 WDR64B1ANS9 1081 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 F13BP05160 661 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 NTF4P34130 210 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 LMNB2Q03252 620 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 PTPN11Q06124 597 aaPredicted RBP9.24□□□□□ -0.93
CCDC39-207ENST00000495817 SEPT6Q14141 434 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 PPM1JQ5JR12 505 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 WIPI1Q5MNZ9 446 aaPredicted RBP9.24□□□□□ -0.93
CCDC39-207ENST00000495817 CYFIP1Q7L576 1253 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 HS2ST1Q7LGA3 356 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 ERMP1Q7Z2K6 904 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 RELL1Q8IUW5 271 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 PLPPR2Q96GM1 343 aa9.24□□□□□ -0.93
CCDC39-207ENST00000495817 RHOVQ96L33 236 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms