RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GIGYF2Q6Y7W6 1299 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 CALML4Q96GE6 196 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 EBAG9O00559 213 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 RGS12O14924 1447 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 NAPAP54920 295 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 TMEM132AQ24JP5 1023 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 MAP3K15Q6ZN16 1313 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 FGAP02671 866 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 GNAQP50148 359 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 BRINP3Q76B58 766 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 PI4K2BQ8TCG2 481 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 SAP30BPQ9UHR5 308 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 MED14O60244 1454 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 MROH5Q6ZUA9 1318 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 hCG_1642624A0A1W2PR95 340 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 MTIF2P46199 727 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 PI16Q6UXB8 463 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 LUC7LQ9NQ29 371 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 JADE2Q9NQC1 790 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 BCAMP50895 628 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 STX17P56962 302 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 SYCP1Q15431 976 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 RRAGBQ5VZM2 374 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 DRC1Q96MC2 740 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 ZSCAN20P17040 1043 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 GYG1P46976 350 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 FANCCQ00597 558 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 MYL5Q02045 173 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 TERF2Q15554 542 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 MICALCLQ6ZW33 695 aa18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 XPO4Q9C0E2 1151 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-209ENST00000494080 LOC102724428A0A0B4J2F2 783 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 MCM7P33993 719 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 PHKA1P46020 1223 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 SIK1P57059 783 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 FKBP15Q5T1M5 1219 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 SEPT11Q9NVA2 429 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 V9GY48 417 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 RTL9Q8NET4 1388 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 UFL1O94874 794 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 CYP21A2P08686 494 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 CALM1P0DP23 149 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 CALM2P0DP24 149 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 CALM3P0DP25 149 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 PAFAH1B1P43034 410 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 SPECC1Q5M775 1068 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 IMPACTQ9P2X3 320 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 PDE6AP16499 860 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 STAT6P42226 847 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 ANO1Q5XXA6 986 aa18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 DIS3L2Q8IYB7 885 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-209ENST00000494080 BMP15O95972 392 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 WDHD1O75717 1129 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 CACNA2D4Q7Z3S7 1137 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 KRT2P35908 639 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 TAX1BP1Q86VP1 789 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 PIGBQ92521 554 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 MYO6Q9UM54 1294 aa18.45■□□□□ 0.54
CCDC88B-209ENST00000494080 ADD1P35611 737 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 RPS8P62241 208 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 ZNF174Q15697 407 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 KRI1Q8N9T8 703 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 TRIM47Q96LD4 638 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 PLIN2Q99541 437 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 PRDM4Q9UKN5 801 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 GOLGA6L7A0A1B0GV03 622 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 PDE8BO95263 885 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 ETF1P62495 437 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 MRFAP1L1Q96HT8 127 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 DDX41Q9UJV9 622 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 HEG1Q9ULI3 1381 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 CHMP4BP1P59074 171 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 DNAJC21Q5F1R6 531 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 FAM182BQ5T319 152 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 KRT40Q6A162 431 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 CUL5Q93034 780 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 SPATA31A3Q5VYP0 1347 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 CCDC178Q5BJE1 867 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 TEX11Q8IYF3 940 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 KCNJ14Q9UNX9 436 aa18.44■□□□□ 0.54
CCDC88B-209ENST00000494080 FBXO38Q6PIJ6 1188 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 CPS1P31327 1500 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 ERLIN2O94905 339 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 CMTR1Q8N1G2 835 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 VWA3AA6NCI4 1184 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 AMPD3Q01432 767 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 ATL3Q6DD88 541 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 SDR42E1Q8WUS8 393 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 TSG101Q99816 390 aa18.43■□□□□ 0.54
CCDC88B-209ENST00000494080 CALML3P27482 149 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 CRKLP46109 303 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 TDRD7Q8NHU6 1098 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 BCCIPQ9P287 314 aaKnown RBP eCLIP18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 USP21Q9UK80 565 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 AKNAD1Q5T1N1 836 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 FBXO3Q9UK99 471 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 DEXIO95424 95 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 TICAM2Q86XR7 235 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 SPTLC3Q9NUV7 552 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 CLTCQ00610 1675 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms