RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 IFI16Q16666 785 aaKnown RBP8.44□□□□□ -1.06
SMC4-223ENST00000493695 KIF4BQ2VIQ3 1234 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 PI16Q6UXB8 463 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 SULF2Q8IWU5 870 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 TOP6BLQ8N6T0 577 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 HRASLS5Q96KN8 279 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 KRT82Q9NSB4 513 aa8.44□□□□□ -1.06
SMC4-223ENST00000493695 GLIS3Q8NEA6 775 aa8.43□□□□□ -1.06
SMC4-223ENST00000493695 CCER1Q8TC90 406 aaPredicted RBP8.43□□□□□ -1.06
SMC4-223ENST00000493695 DUSP23Q9BVJ7 150 aa8.43□□□□□ -1.06
SMC4-223ENST00000493695 VAV3Q9UKW4 847 aa8.43□□□□□ -1.06
SMC4-223ENST00000493695 FUT4P22083 530 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 JAG1P78504 1218 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 PRKCQQ04759 706 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 ZNF124Q15973 351 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 PKN1Q16512 942 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 FAM168AQ92567 244 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 BCO2Q9BYV7 579 aa8.42□□□□□ -1.06
SMC4-223ENST00000493695 CEACAM5P06731 702 aa8.41□□□□□ -1.06
SMC4-223ENST00000493695 RNASE1P07998 156 aaKnown RBP8.41□□□□□ -1.06
SMC4-223ENST00000493695 ISL2Q96A47 359 aa8.41□□□□□ -1.06
SMC4-223ENST00000493695 CSADQ9Y600 493 aa8.41□□□□□ -1.06
SMC4-223ENST00000493695 TMEM265A0A087WTH1 108 aa8.4□□□□□ -1.06
SMC4-223ENST00000493695 ANGEL2Q5VTE6 544 aaKnown RBP8.4□□□□□ -1.06
SMC4-223ENST00000493695 ATG4DQ86TL0 474 aaPredicted RBP8.4□□□□□ -1.06
SMC4-223ENST00000493695 EMILIN2Q9BXX0 1053 aa8.4□□□□□ -1.06
SMC4-223ENST00000493695 MBNL3Q9NUK0 354 aaKnown RBP8.4□□□□□ -1.06
SMC4-223ENST00000493695 U3KQE9 123 aa8.4□□□□□ -1.06
SMC4-223ENST00000493695 NEFMP07197 916 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 XRCC5P13010 732 aaKnown RBP8.39□□□□□ -1.07
SMC4-223ENST00000493695 ARNTP27540 789 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 NXPE4Q6UWF7 544 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 WFDC3Q8IUB2 231 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 KSR1Q8IVT5 923 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 STK35Q8TDR2 534 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 ADAMTS6Q9UKP5 1117 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 PCDHGC5Q9Y5F6 944 aa8.39□□□□□ -1.07
SMC4-223ENST00000493695 FARP2O94887 1054 aaPredicted RBP8.38□□□□□ -1.07
SMC4-223ENST00000493695 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.38□□□□□ -1.07
SMC4-223ENST00000493695 PDZD3Q86UT5 571 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 TXNDC2Q86VQ3 553 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 RNF214Q8ND24 703 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 LRRN4CLQ8ND94 238 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 GPBAR1Q8TDU6 330 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 RBCK1Q9BYM8 510 aa8.38□□□□□ -1.07
SMC4-223ENST00000493695 PNMA6FA0A0J9YX94 578 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 NME2P22392 152 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 OXCT1P55809 520 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 IKZF1Q13422 519 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 TPTE2Q6XPS3 522 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 TMC7Q7Z402 723 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 RETREG2Q8NC44 543 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 ALKBH8Q96BT7 664 aaKnown RBP8.37□□□□□ -1.07
SMC4-223ENST00000493695 SLC38A3Q99624 504 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 PRDM7Q9NQW5 492 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 GTF2IRD1Q9UHL9 959 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.37□□□□□ -1.07
SMC4-223ENST00000493695 CARMIL2Q6F5E8 1435 aa8.37□□□□□ -1.07
SMC4-223ENST00000493695 DCDC2CA8MYV0 355 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 PDE4CQ08493 712 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 ZC3H12AQ5D1E8 599 aaKnown RBP8.36□□□□□ -1.07
SMC4-223ENST00000493695 PPM1JQ5JR12 505 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 CDC37L1Q7L3B6 337 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 MKNK2Q9HBH9 465 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 PLAGL2Q9UPG8 496 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 SAMM50Q9Y512 469 aa8.36□□□□□ -1.07
SMC4-223ENST00000493695 IGHA2P01877 340 aa8.35□□□□□ -1.07
SMC4-223ENST00000493695 MAPK1P28482 360 aa8.35□□□□□ -1.07
SMC4-223ENST00000493695 ERVK-24P63145 666 aa8.35□□□□□ -1.07
SMC4-223ENST00000493695 PLCB3Q01970 1234 aa8.35□□□□□ -1.07
SMC4-223ENST00000493695 SOWAHDA6NJG2 315 aa8.34□□□□□ -1.07
SMC4-223ENST00000493695 GNAT3A8MTJ3 354 aa8.34□□□□□ -1.07
SMC4-223ENST00000493695 MPRIPQ6WCQ1 1025 aa8.34□□□□□ -1.07
SMC4-223ENST00000493695 C12orf40Q86WS4 652 aa8.34□□□□□ -1.07
SMC4-223ENST00000493695 LRRC10BA6NIK2 292 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 FBXO24O75426 580 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 ZP2Q05996 745 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 SLC23A3Q6PIS1 610 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 TMEM40Q8WWA1 233 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 ASB11Q8WXH4 323 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 PRDM10Q9NQV6 1147 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 DCTN4Q9UJW0 460 aa8.33□□□□□ -1.08
SMC4-223ENST00000493695 MAPK8P45983 427 aa8.32□□□□□ -1.08
SMC4-223ENST00000493695 GRIN3AQ8TCU5 1115 aa8.32□□□□□ -1.08
SMC4-223ENST00000493695 ELMO3Q96BJ8 720 aa8.32□□□□□ -1.08
SMC4-223ENST00000493695 HEXIM2Q96MH2 286 aaKnown RBP8.32□□□□□ -1.08
SMC4-223ENST00000493695 PCDHA4Q9UN74 947 aa8.32□□□□□ -1.08
SMC4-223ENST00000493695 GSTT1P30711 240 aa8.31□□□□□ -1.08
SMC4-223ENST00000493695 KCNMB1Q16558 191 aa8.31□□□□□ -1.08
SMC4-223ENST00000493695 SNX11Q9Y5W9 270 aa8.31□□□□□ -1.08
SMC4-223ENST00000493695 DBX1A6NMT0 343 aa8.3□□□□□ -1.08
SMC4-223ENST00000493695 MLANAQ16655 118 aa8.3□□□□□ -1.08
SMC4-223ENST00000493695 ZSWIM9Q86XI8 627 aa8.3□□□□□ -1.08
SMC4-223ENST00000493695 NECAB3Q96P71 396 aaPredicted RBP8.3□□□□□ -1.08
SMC4-223ENST00000493695 CEP44Q9C0F1 390 aa8.3□□□□□ -1.08
SMC4-223ENST00000493695 ZNF252P-AS1Q0IIN9 211 aa8.29□□□□□ -1.08
SMC4-223ENST00000493695 LLGL2Q6P1M3 1020 aa8.29□□□□□ -1.08
SMC4-223ENST00000493695 PRDM5Q9NQX1 630 aaPredicted RBP8.29□□□□□ -1.08
SMC4-223ENST00000493695 PRAMEF27A3QJZ7 478 aa8.28□□□□□ -1.08
SMC4-223ENST00000493695 FAM155AB1AL88 458 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms