RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ZBTB7BO15156 539 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-214ENST00000493608 PPP1R12BO60237 982 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-214ENST00000493608 USP2O75604 605 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-214ENST00000493608 PRDX5P30044 214 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 ATP8B2P98198 1209 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 HDLBPQ00341 1268 aaKnown RBP13.19□□□□□ -0.3
COL6A3-214ENST00000493608 DIXDC1Q155Q3 683 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 LDLRAD1Q5T700 205 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 APOBEC3HQ6NTF7 200 aaKnown RBP13.19□□□□□ -0.3
COL6A3-214ENST00000493608 SLC10A4Q96EP9 437 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 XAGE2Q96GT9 111 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 AKAP2Q9Y2D5 859 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 AK9Q5TCS8 1911 aa13.19□□□□□ -0.3
COL6A3-214ENST00000493608 MYH2Q9UKX2 1941 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 TBC1D12O60347 775 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 TNFAIP1Q13829 316 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 ZDHHC15Q96MV8 337 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 TEPSINQ96N21 525 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 MRIQ9BWK5 157 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 DENND2AQ9ULE3 1009 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 SUGT1Q9Y2Z0 365 aa13.18□□□□□ -0.3
COL6A3-214ENST00000493608 MAST3O60307 1309 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 LDHBP07195 334 aaKnown RBP13.17□□□□□ -0.3
COL6A3-214ENST00000493608 TNNI2P48788 182 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 RASGRF1Q13972 1273 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 MFSD10Q14728 455 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 MAP3K11Q16584 847 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 HHIPL2Q6UWX4 724 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 ABCF2Q9UG63 623 aa13.17□□□□□ -0.3
COL6A3-214ENST00000493608 SURF6O75683 361 aaKnown RBP13.16□□□□□ -0.3
COL6A3-214ENST00000493608 TBC1D8O95759 1140 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 IREB2P48200 963 aaKnown RBP13.16□□□□□ -0.3
COL6A3-214ENST00000493608 OS9Q13438 667 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-214ENST00000493608 GORABQ5T7V8 394 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 SPRYD7Q5W111 196 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 SSH3Q8TE77 659 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 TMOD2Q9NZR1 351 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 DAGLAQ9Y4D2 1042 aa13.16□□□□□ -0.3
COL6A3-214ENST00000493608 SEMA3EO15041 775 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 TM4SF4P48230 202 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 TCP10Q12799 353 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 MVPQ14764 893 aaKnown RBP13.15□□□□□ -0.3
COL6A3-214ENST00000493608 CDC42EP5Q6NZY7 148 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 PI16Q6UXB8 463 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 ELP3Q9H9T3 547 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 USP40Q9NVE5 1235 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 SAGE1Q9NXZ1 904 aa13.15□□□□□ -0.3
COL6A3-214ENST00000493608 OTOFQ9HC10 1997 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 GJA5P36382 358 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 TBC1D9Q6ZT07 1266 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 ANKRD13AQ8IZ07 590 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 ABHD8Q96I13 439 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 WNK4Q96J92 1243 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 LARP6Q9BRS8 491 aaKnown RBP13.14□□□□□ -0.31
COL6A3-214ENST00000493608 HMG20BQ9P0W2 317 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 COG6Q9Y2V7 657 aa13.14□□□□□ -0.31
COL6A3-214ENST00000493608 SALL1Q9NSC2 1324 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 NFIAQ12857 509 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 DGKZQ13574 1117 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 CEP85Q6P2H3 762 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-214ENST00000493608 MIGA2Q7L4E1 593 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 FAM83AQ86UY5 434 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 DZIP1Q86YF9 867 aaKnown RBP13.13□□□□□ -0.31
COL6A3-214ENST00000493608 RNF166Q96A37 237 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-214ENST00000493608 R3HDMLQ9H3Y0 253 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 SNRKQ9NRH2 765 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 RCAN3Q9UKA8 241 aa13.13□□□□□ -0.31
COL6A3-214ENST00000493608 MCAMP43121 646 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 MAP3K9P80192 1104 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 SREBF2Q12772 1141 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 TNNI3KQ59H18 835 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 FKBP1CQ5VVH2 108 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 ZFPM1Q8IX07 1006 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 ZGPATQ8N5A5 531 aaKnown RBP13.12□□□□□ -0.31
COL6A3-214ENST00000493608 SPATA5Q8NB90 893 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 BBXQ8WY36 941 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-214ENST00000493608 OPTNQ96CV9 577 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 DBNDD2Q9BQY9 259 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 MCOLN1Q9GZU1 580 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 RTN4Q9NQC3 1192 aaKnown RBP13.12□□□□□ -0.31
COL6A3-214ENST00000493608 FPGT-TNNI3KV9GXZ4 949 aa13.12□□□□□ -0.31
COL6A3-214ENST00000493608 MYO5AQ9Y4I1 1855 aaKnown RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 MANSC4A6NHS7 340 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 ARHGAP33O14559 1287 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 ARID4AP29374 1257 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 MECOMQ03112 1051 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 VGLL4Q14135 290 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 TTC39AQ5SRH9 613 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 SPTY2D1Q68D10 685 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 ERICH6Q7L0X2 663 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 FAM151AQ8WW52 585 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 ZKSCAN4Q969J2 545 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 DDX27Q96GQ7 796 aaKnown RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 CCDC8Q9H0W5 538 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-214ENST00000493608 BCL11AQ9H165 835 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 FAM198AQ9UFP1 575 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 EXOC6BQ9Y2D4 811 aa13.11□□□□□ -0.31
COL6A3-214ENST00000493608 NOP58Q9Y2X3 529 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms