RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 NKX2-3Q8TAU0 364 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 NOL10Q9BSC4 688 aaKnown RBP14.3□□□□□ -0.12
COL6A3-213ENST00000493475 IDI2Q9BXS1 227 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 ZNF112Q9UJU3 913 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 PTCH2Q9Y6C5 1203 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 POTEFA5A3E0 1075 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 FMNL1O95466 1100 aaPredicted RBP14.29□□□□□ -0.12
COL6A3-213ENST00000493475 INPP5BP32019 993 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 PHKA1P46020 1223 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 ERICH6Q7L0X2 663 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 RAET1EQ8TD07 263 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 KCNH4Q9UQ05 1017 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 MYH13Q9UKX3 1938 aa14.29□□□□□ -0.12
COL6A3-213ENST00000493475 A0A1B0GUL7 405 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 GNAI2P04899 355 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 RGS3P49796 1198 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 RARSP54136 660 aaKnown RBP14.28□□□□□ -0.12
COL6A3-213ENST00000493475 FCGRTP55899 365 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 NFIAQ12857 509 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 SCYL3Q8IZE3 742 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 TRIM47Q96LD4 638 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 NEUROD6Q96NK8 337 aa14.28□□□□□ -0.12
COL6A3-213ENST00000493475 GAKO14976 1311 aa14.27□□□□□ -0.12
COL6A3-213ENST00000493475 PSMC4P43686 418 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 UBXN2AP68543 259 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 G3BP1Q13283 466 aaKnown RBP eCLIP14.27□□□□□ -0.13
COL6A3-213ENST00000493475 RASGRF1Q13972 1273 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 SMCR8Q8TEV9 937 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-213ENST00000493475 FAM163AQ96GL9 167 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-213ENST00000493475 MEIS3Q99687 375 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-213ENST00000493475 FAM198AQ9UFP1 575 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 CPA4Q9UI42 421 aa14.27□□□□□ -0.13
COL6A3-213ENST00000493475 PA2G4Q9UQ80 394 aaKnown RBP14.27□□□□□ -0.13
COL6A3-213ENST00000493475 MROH7-TTC4A0A0A0MT08 1334 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 CTNND1O60716 968 aaKnown RBP14.26□□□□□ -0.13
COL6A3-213ENST00000493475 UQCRFS1P1P0C7P4 283 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 CAPN2P17655 700 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 EN2P19622 333 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-213ENST00000493475 BTDP43251 543 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 PICALMQ13492 652 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 MTX1Q13505 466 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 C17orf99Q6UX52 265 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 XAGE2Q96GT9 111 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 TBC1D2Q9BYX2 928 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 SRRDQ9UH36 339 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 PNMA3Q9UL41 463 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 SLC45A1Q9Y2W3 748 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 ZHX2Q9Y6X8 837 aa14.26□□□□□ -0.13
COL6A3-213ENST00000493475 MYPNQ86TC9 1320 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 GRK4P32298 578 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 TIMM10P62072 90 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 TFCP2Q12800 502 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 PABPC4Q13310 644 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL6A3-213ENST00000493475 OS9Q13438 667 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-213ENST00000493475 ATF7IPQ6VMQ6 1270 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 FRAT1Q92837 279 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-213ENST00000493475 AK9Q5TCS8 1911 aa14.25□□□□□ -0.13
COL6A3-213ENST00000493475 RBBP6Q7Z6E9 1792 aaKnown RBP14.24□□□□□ -0.13
COL6A3-213ENST00000493475 HTTP42858 3142 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 IGSF3O75054 1194 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 BAG3O95817 575 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 MYCP01106 439 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-213ENST00000493475 PLCG2P16885 1265 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 ADORA1P30542 326 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 GADL1Q6ZQY3 521 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 SPATA5Q8NB90 893 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 SLAIN1Q8ND83 568 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 SH3TC2Q8TF17 1288 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 TRIM34Q9BYJ4 488 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 RAI14Q9P0K7 980 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 LRP2BPQ9P2M1 347 aa14.24□□□□□ -0.13
COL6A3-213ENST00000493475 GPR75-ASB3A0A0A6YYF3 556 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 A0A0G2JLL6 359 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-213ENST00000493475 PTPRAP18433 802 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 MECOMQ03112 1051 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 CCDC158Q5M9N0 1113 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 PRRT2Q7Z6L0 340 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-213ENST00000493475 HTATIP2Q9BUP3 242 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 ARHGAP39Q9C0H5 1083 aa14.23□□□□□ -0.13
COL6A3-213ENST00000493475 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.23□□□□□ -0.13
COL6A3-213ENST00000493475 KIAA0100Q14667 2235 aaKnown RBP14.23□□□□□ -0.13
COL6A3-213ENST00000493475 TBC1D12O60347 775 aa14.22□□□□□ -0.13
COL6A3-213ENST00000493475 OSBPP22059 807 aa14.22□□□□□ -0.13
COL6A3-213ENST00000493475 FTSJ3Q8IY81 847 aaKnown RBP14.22□□□□□ -0.13
COL6A3-213ENST00000493475 OSBPL5Q9H0X9 879 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-213ENST00000493475 DHX36Q9H2U1 1008 aaKnown RBP14.22□□□□□ -0.13
COL6A3-213ENST00000493475 AS3MTQ9HBK9 375 aa14.22□□□□□ -0.13
COL6A3-213ENST00000493475 TRIM75PA6NK02 468 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 PHF20L1A8MW92 1017 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 TNPO2O14787 897 aaKnown RBP14.21□□□□□ -0.13
COL6A3-213ENST00000493475 ECM2O94769 699 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-213ENST00000493475 CYP2C8P10632 490 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 TRIM27P14373 513 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 CLCN6P51797 869 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 MAP3K10Q02779 954 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 HABP4Q5JVS0 413 aaKnown RBP14.21□□□□□ -0.13
COL6A3-213ENST00000493475 TTC39AQ5SRH9 613 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 ZKSCAN2Q63HK3 967 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 COA7Q96BR5 231 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms