RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 WFDC3Q8IUB2 231 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 GPBAR1Q8TDU6 330 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 FBXL18Q96ME1 805 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 LRRC4CQ9HCJ2 640 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 PPM1HQ9ULR3 514 aa6.01□□□□□ -1.45
CPSF3-205ENST00000489629 PAGE1O75459 146 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 FAM87AP0C7U9 286 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 HCLS1P14317 486 aaPredicted RBP6□□□□□ -1.45
CPSF3-205ENST00000489629 ERVK-24P63145 666 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 HNRNPUQ00839 825 aaKnown RBP eCLIP6□□□□□ -1.45
CPSF3-205ENST00000489629 CYP27C1Q4G0S4 372 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 RASIP1Q5U651 963 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 MAP1SQ66K74 1059 aaPredicted RBP6□□□□□ -1.45
CPSF3-205ENST00000489629 TPTE2Q6XPS3 522 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 KRTAP19-1Q8IUB9 90 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 GRIN3AQ8TCU5 1115 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 PCOLCE2Q9UKZ9 415 aa6□□□□□ -1.45
CPSF3-205ENST00000489629 PAX4O43316 350 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 RING1Q06587 406 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 RNF214Q8ND24 703 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 ISL2Q96A47 359 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 CEP44Q9C0F1 390 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 PAK6Q9NQU5 681 aaPredicted RBP5.99□□□□□ -1.45
CPSF3-205ENST00000489629 U3KQE9 123 aa5.99□□□□□ -1.45
CPSF3-205ENST00000489629 RNGTTO60942 597 aaKnown RBP5.98□□□□□ -1.45
CPSF3-205ENST00000489629 LEFTY1O75610 366 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 TRIM37O94972 964 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 P4HBP07237 508 aaKnown RBP5.98□□□□□ -1.45
CPSF3-205ENST00000489629 NTF4P34130 210 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 TP53INP2Q8IXH6 220 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 BCL7CQ8WUZ0 217 aaPredicted RBP5.98□□□□□ -1.45
CPSF3-205ENST00000489629 C12orf49Q9H741 205 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 CBX8Q9HC52 389 aa5.98□□□□□ -1.45
CPSF3-205ENST00000489629 FBXO24O75426 580 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 ATP2B2Q01814 1243 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 FAM214BQ7L5A3 538 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 KRTAP1-3Q8IUG1 177 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 FLCNQ8NFG4 579 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 DUSP23Q9BVJ7 150 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 SPG7Q9UQ90 795 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 SAMM50Q9Y512 469 aa5.97□□□□□ -1.45
CPSF3-205ENST00000489629 CELA3AP09093 270 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 USP17L7P0C7H9 530 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 SCARA3Q6AZY7 606 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 LLGL2Q6P1M3 1020 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 SPRED2Q7Z698 418 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.96□□□□□ -1.46
CPSF3-205ENST00000489629 PLD6Q8N2A8 252 aaKnown RBP5.96□□□□□ -1.46
CPSF3-205ENST00000489629 AGBL5Q8NDL9 886 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 MKNK2Q9HBH9 465 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 GOLGA2P5Q9HBQ8 144 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 FAM8A1Q9UBU6 413 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 SLC5A6Q9Y289 635 aa5.96□□□□□ -1.46
CPSF3-205ENST00000489629 OXCT1P55809 520 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 LRRC14Q15048 493 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 PPM1JQ5JR12 505 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 LCE3BQ5TA77 95 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 ZNF574Q6ZN55 896 aaPredicted RBP5.95□□□□□ -1.46
CPSF3-205ENST00000489629 UBE3DQ7Z6J8 389 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 FAM181AQ8N9Y4 354 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 NETO1Q8TDF5 533 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 ACSBG1Q96GR2 724 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 FRMD6Q96NE9 622 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 CYP8B1Q9UNU6 501 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 CSADQ9Y600 493 aa5.95□□□□□ -1.46
CPSF3-205ENST00000489629 DCDC2CA8MYV0 355 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 PATL2C9JE40 543 aaKnown RBP5.94□□□□□ -1.46
CPSF3-205ENST00000489629 LDHBP07195 334 aaKnown RBP5.94□□□□□ -1.46
CPSF3-205ENST00000489629 ITGB5P18084 799 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 TXKP42681 527 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 BNIP3Q12983 259 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 ZBTB37Q5TC79 503 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 PCNX4Q63HM2 1172 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 C12orf40Q86WS4 652 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 STK11IPQ8N1F8 1099 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 TOP6BLQ8N6T0 577 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 MISP3Q96FF7 219 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 HEXIM2Q96MH2 286 aaKnown RBP5.94□□□□□ -1.46
CPSF3-205ENST00000489629 SSU72Q9NP77 194 aaKnown RBP5.94□□□□□ -1.46
CPSF3-205ENST00000489629 PLAGL2Q9UPG8 496 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 RNF114Q9Y508 228 aa5.94□□□□□ -1.46
CPSF3-205ENST00000489629 FANCGO15287 622 aa5.93□□□□□ -1.46
CPSF3-205ENST00000489629 PTPN11Q06124 597 aaPredicted RBP5.93□□□□□ -1.46
CPSF3-205ENST00000489629 SV2BQ7L1I2 683 aa5.93□□□□□ -1.46
CPSF3-205ENST00000489629 RNF19AQ9NV58 838 aa5.93□□□□□ -1.46
CPSF3-205ENST00000489629 VAV3Q9UKW4 847 aa5.93□□□□□ -1.46
CPSF3-205ENST00000489629 PCDHA4Q9UN74 947 aa5.93□□□□□ -1.46
CPSF3-205ENST00000489629 CEACAM5P06731 702 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 CD8BP10966 210 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 GNA15P30679 374 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 PRKCQQ04759 706 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 INPP5AQ14642 412 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 CYFIP1Q7L576 1253 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 GAL3ST3Q96A11 431 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 TNKS2Q9H2K2 1166 aa5.92□□□□□ -1.46
CPSF3-205ENST00000489629 PRPF40AO75400 957 aaKnown RBP5.91□□□□□ -1.46
CPSF3-205ENST00000489629 FUT4P22083 530 aa5.91□□□□□ -1.46
CPSF3-205ENST00000489629 IFI16Q16666 785 aaKnown RBP5.91□□□□□ -1.46
CPSF3-205ENST00000489629 LRFN4Q6PJG9 635 aa5.91□□□□□ -1.46
CPSF3-205ENST00000489629 PRDM10Q9NQV6 1147 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms