RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 TCP10Q12799 353 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 RASA3Q14644 834 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 CERS3Q8IU89 383 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 DIAPH3Q9NSV4 1193 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 TRAF5O00463 557 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 GPAA1O43292 621 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 FMR1Q06787 632 aaKnown RBP eCLIP23.16■■□□□ 1.38e-10■■■■■ 77.9
CCM2-216ENST00000488727 PICALMQ13492 652 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 TNFAIP1Q13829 316 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 CWC27Q6UX04 472 aaKnown RBP23.16■■□□□ 1.3
CCM2-216ENST00000488727 CCDC129Q6ZRS4 1044 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 HSCBQ8IWL3 235 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 ZFPM1Q8IX07 1006 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 TGFBRAP1Q8WUH2 860 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 STRBPQ96SI9 672 aaKnown RBP23.16■■□□□ 1.3
CCM2-216ENST00000488727 HELLSQ9NRZ9 838 aa23.16■■□□□ 1.3
CCM2-216ENST00000488727 DDX60LQ5H9U9 1706 aaKnown RBP23.15■■□□□ 1.3
CCM2-216ENST00000488727 PRKAB2O43741 272 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 CHMLP26374 656 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 PRAMEF18Q5VWM3 479 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 FAM83AQ86UY5 434 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 CDAN1Q8IWY9 1227 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 TMEM39BQ9GZU3 492 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 NAV1Q8NEY1 1877 aa23.15■■□□□ 1.3
CCM2-216ENST00000488727 HIP1O00291 1037 aa23.14■■□□□ 1.3
CCM2-216ENST00000488727 SDR42E1Q8WUS8 393 aa23.14■■□□□ 1.3
CCM2-216ENST00000488727 CRNKL1Q9BZJ0 848 aaKnown RBP23.14■■□□□ 1.3
CCM2-216ENST00000488727 IL25Q9H293 177 aa23.14■■□□□ 1.3
CCM2-216ENST00000488727 FLT1P17948 1338 aa23.14■■□□□ 1.29
CCM2-216ENST00000488727 MYH1P12882 1939 aa23.14■■□□□ 1.29
CCM2-216ENST00000488727 BAZ2AQ9UIF9 1905 aaKnown RBP23.14■■□□□ 1.29
CCM2-216ENST00000488727 TNNI2P48788 182 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 MCMDC2Q4G0Z9 681 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 ZNF589Q86UQ0 364 aaPredicted RBP23.13■■□□□ 1.29
CCM2-216ENST00000488727 MAPKAPK5Q8IW41 473 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 TEPSINQ96N21 525 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 KIF2CQ99661 725 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 SLKQ9H2G2 1235 aaPredicted RBP23.13■■□□□ 1.29
CCM2-216ENST00000488727 ENTPD3O75355 529 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 NPM3O75607 178 aaKnown RBP23.13■■□□□ 1.29
CCM2-216ENST00000488727 FAM151AQ8WW52 585 aa23.13■■□□□ 1.29
CCM2-216ENST00000488727 MKRN1Q9UHC7 482 aaKnown RBP23.13■■□□□ 1.29
CCM2-216ENST00000488727 OSBPL5Q9H0X9 879 aaPredicted RBP23.12■■□□□ 1.29
CCM2-216ENST00000488727 PPP2R3BQ9Y5P8 575 aa23.12■■□□□ 1.29
CCM2-216ENST00000488727 SLC4A4Q9Y6R1 1079 aa23.12■■□□□ 1.29
CCM2-216ENST00000488727 TRPM7Q96QT4 1865 aa23.12■■□□□ 1.29
CCM2-216ENST00000488727 USP5P45974 858 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 SH3BP5LQ7L8J4 393 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 CDCA5Q96FF9 252 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 RPAP1Q9BWH6 1393 aaPredicted RBP23.11■■□□□ 1.29
CCM2-216ENST00000488727 PASKQ96RG2 1323 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 SSC5DA1L4H1 1573 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 FOXP2O15409 715 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 FSTL1Q12841 308 aa23.11■■□□□ 1.29
CCM2-216ENST00000488727 DCP1AQ9NPI6 582 aaPredicted RBP23.11■■□□□ 1.29
CCM2-216ENST00000488727 SIPA1L1O43166 1804 aa23.1■■□□□ 1.29
CCM2-216ENST00000488727 DDTLA6NHG4 134 aaPredicted RBP23.1■■□□□ 1.29
CCM2-216ENST00000488727 NBPF12Q5TAG4 269 aaPredicted RBP23.1■■□□□ 1.29
CCM2-216ENST00000488727 CASC1Q6TDU7 716 aa23.1■■□□□ 1.29
CCM2-216ENST00000488727 COL2A1P02458 1487 aaPredicted RBP23.1■■□□□ 1.29
CCM2-216ENST00000488727 CCDC171Q6TFL3 1326 aa23.09■■□□□ 1.29
CCM2-216ENST00000488727 GSG1L2A8MUP6 293 aa23.09■■□□□ 1.29
CCM2-216ENST00000488727 VPS53Q5VIR6 699 aa23.09■■□□□ 1.29
CCM2-216ENST00000488727 ATRNL1Q5VV63 1379 aa23.09■■□□□ 1.29
CCM2-216ENST00000488727 EPB41L4AQ9HCS5 686 aaPredicted RBP23.08■■□□□ 1.29
CCM2-216ENST00000488727 SAP30BPQ9UHR5 308 aaKnown RBP23.08■■□□□ 1.29
CCM2-216ENST00000488727 GNAT2P19087 354 aa23.08■■□□□ 1.28
CCM2-216ENST00000488727 ATP8A2Q9NTI2 1148 aa23.08■■□□□ 1.28
CCM2-216ENST00000488727 PALD1Q9ULE6 856 aa23.08■■□□□ 1.28
CCM2-216ENST00000488727 RAD50Q92878 1312 aa23.07■■□□□ 1.28
CCM2-216ENST00000488727 SLC4A8Q2Y0W8 1093 aa23.07■■□□□ 1.28
CCM2-216ENST00000488727 ZSCAN29Q8IWY8 852 aaPredicted RBP23.07■■□□□ 1.28
CCM2-216ENST00000488727 CHMP5Q9NZZ3 219 aa23.07■■□□□ 1.28
CCM2-216ENST00000488727 PATL2C9JE40 543 aaKnown RBP23.06■■□□□ 1.28
CCM2-216ENST00000488727 SGSM2O43147 1006 aa23.06■■□□□ 1.28
CCM2-216ENST00000488727 RUFY2Q8WXA3 655 aa23.06■■□□□ 1.28
CCM2-216ENST00000488727 CSRNP1Q96S65 589 aa23.06■■□□□ 1.28
CCM2-216ENST00000488727 ZNF408Q9H9D4 720 aa23.06■■□□□ 1.28
CCM2-216ENST00000488727 SLURP2P0DP57 97 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 MCM9Q9NXL9 1143 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 HSPD1P10809 573 aaKnown RBP23.05■■□□□ 1.28
CCM2-216ENST00000488727 EVX2Q03828 476 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 CST9Q5W186 159 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 ESYT1Q9BSJ8 1104 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 USP26Q9BXU7 913 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 DHX36Q9H2U1 1008 aaKnown RBP23.05■■□□□ 1.28
CCM2-216ENST00000488727 FZD1Q9UP38 647 aa23.05■■□□□ 1.28
CCM2-216ENST00000488727 LAMB1P07942 1786 aa23.04■■□□□ 1.28
CCM2-216ENST00000488727 CELF2O95319 508 aaKnown RBP23.04■■□□□ 1.28
CCM2-216ENST00000488727 APPP05067 770 aa23.04■■□□□ 1.28
CCM2-216ENST00000488727 DDIT3P35638 169 aa23.04■■□□□ 1.28
CCM2-216ENST00000488727 SUPT20HL1Q3ZLR7 823 aa23.04■■□□□ 1.28
CCM2-216ENST00000488727 IFNL3Q8IZI9 196 aa23.04■■□□□ 1.28
CCM2-216ENST00000488727 GIMAP6Q6P9H5 292 aa23.03■■□□□ 1.28
CCM2-216ENST00000488727 CYP2D7A0A087X1C5 515 aa23.02■■□□□ 1.28
CCM2-216ENST00000488727 USP17L12C9JPN9 530 aa23.02■■□□□ 1.28
CCM2-216ENST00000488727 USP17L21D6R901 530 aa23.02■■□□□ 1.28
CCM2-216ENST00000488727 SMIM22K7EJ46 135 aa23.02■■□□□ 1.28
CCM2-216ENST00000488727 CYP2D6P10635 497 aa23.02■■□□□ 1.28
CCM2-216ENST00000488727 PLCD1P51178 756 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 324.9 ms