RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 GCC2Q8IWJ2 1684 aa18.46■□□□□ 0.55
COL7A1-210ENST00000487017 FERP16591 822 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 GJC1P36383 396 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 PAK1Q13153 545 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 TRAF5O00463 557 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 DDB1Q16531 1140 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 CCDC50Q8IVM0 306 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 MPHOSPH6Q99547 160 aaKnown RBP18.45■□□□□ 0.54
COL7A1-210ENST00000487017 IMPG2Q9BZV3 1241 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 RAPGEF1Q13905 1077 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 KRBA2Q6ZNG9 492 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 ME3Q16798 604 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 SREK1Q8WXA9 508 aaKnown RBP18.45■□□□□ 0.54
COL7A1-210ENST00000487017 LGR6Q9HBX8 967 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 GABPB1Q06547 395 aaPredicted RBP18.45■□□□□ 0.54
COL7A1-210ENST00000487017 JAKMIP2Q96AA8 810 aa18.45■□□□□ 0.54
COL7A1-210ENST00000487017 SMIM23A6NLE4 172 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 C10orf67Q8IYJ2 551 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 V9GY48 417 aaPredicted RBP18.44■□□□□ 0.54
COL7A1-210ENST00000487017 ARHGEF10O15013 1369 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 TLDC2A0PJX2 215 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 DCAF17Q5H9S7 520 aaPredicted RBP18.44■□□□□ 0.54
COL7A1-210ENST00000487017 KRT40Q6A162 431 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 VWA3BQ502W6 1294 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 TTC38Q5R3I4 469 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 TMTC1Q8IUR5 882 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 NFE2L3Q9Y4A8 694 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 PABPN1LA6NDY0 278 aaKnown RBP18.44■□□□□ 0.54
COL7A1-210ENST00000487017 CCDC26Q8TAB7 109 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 UBLCP1Q8WVY7 318 aaPredicted RBP18.44■□□□□ 0.54
COL7A1-210ENST00000487017 CCDC114Q96M63 670 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 ATP6V0A2Q9Y487 856 aa18.44■□□□□ 0.54
COL7A1-210ENST00000487017 MXRA7P84157 204 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 GCKRQ14397 625 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 POSTNQ15063 836 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 ZNF594Q96JF6 807 aaPredicted RBP18.43■□□□□ 0.54
COL7A1-210ENST00000487017 NUP58Q9BVL2 599 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 MTUS1Q9ULD2 1270 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 SPATA31E1Q6ZUB1 1445 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 CSGALNACT2Q8N6G5 542 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 DSCC1Q9BVC3 393 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 SAMD15Q9P1V8 674 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 RASSF4Q9H2L5 321 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 HDAC9Q9UKV0 1011 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 PPP1R7Q15435 360 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 C8orf74Q6P047 294 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 ZNF354CQ86Y25 554 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 CALCOCO2Q13137 446 aa18.43■□□□□ 0.54
COL7A1-210ENST00000487017 CA8P35219 290 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 ARL1P40616 181 aaPredicted RBP18.42■□□□□ 0.54
COL7A1-210ENST00000487017 DTNBO60941 627 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 ATP7AQ04656 1500 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 CEP57Q86XR8 500 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 ABCC2Q92887 1545 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 C19orf44Q9H6X5 657 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 MAPK8IP1Q9UQF2 711 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 EPB41P11171 864 aaKnown RBP18.42■□□□□ 0.54
COL7A1-210ENST00000487017 KCNA6P17658 529 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 PLCB3Q01970 1234 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 SEL1L2Q5TEA6 688 aa18.42■□□□□ 0.54
COL7A1-210ENST00000487017 E7EWF7 191 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 ZNF500O60304 480 aaPredicted RBP18.41■□□□□ 0.54
COL7A1-210ENST00000487017 ATP5JP18859 108 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 CCDC25Q86WR0 208 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 NDUFB9Q9Y6M9 179 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 PPP2R5BQ15173 497 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 SECISBP2LQ93073 1101 aaKnown RBP18.41■□□□□ 0.54
COL7A1-210ENST00000487017 PHKBQ93100 1093 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 SLC52A2Q9HAB3 445 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 NSFL1CQ9UNZ2 370 aaKnown RBP18.41■□□□□ 0.54
COL7A1-210ENST00000487017 PDE8AO60658 829 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 ZBTB16Q05516 673 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 TBX22Q9Y458 520 aa18.41■□□□□ 0.54
COL7A1-210ENST00000487017 ADGBQ8N7X0 1667 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 MTX1Q13505 466 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 TTC6Q86TZ1 520 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 SSH3Q8TE77 659 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 NAP1L3Q99457 506 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 MRPL12P52815 198 aaKnown RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 EIF4A1P60842 406 aaKnown RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 KCNK9Q9NPC2 374 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 JAG2Q9Y219 1238 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 FRMD4BQ9Y2L6 1034 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 CCNT1O60563 726 aaKnown RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 MYL10Q9BUA6 226 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 ZC3H12CQ9C0D7 883 aaKnown RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 XPO4Q9C0E2 1151 aaKnown RBP18.4■□□□□ 0.54
COL7A1-210ENST00000487017 ADALQ6DHV7 355 aa18.4■□□□□ 0.54
COL7A1-210ENST00000487017 DISP1Q96F81 1524 aa18.39■□□□□ 0.54
COL7A1-210ENST00000487017 PLS1Q14651 629 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 B4GALNT4Q76KP1 1039 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 NOX5Q96PH1 765 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 CTDSPL2Q05D32 466 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 PARP10Q53GL7 1025 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 TCHPQ9BT92 498 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 TAB2Q9NYJ8 693 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 PALD1Q9ULE6 856 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 SH3TC1Q8TE82 1336 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 KRT9P35527 623 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 APBB1IPQ7Z5R6 666 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms