RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 HSP90AB3PQ58FF7 597 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 KRT26Q7Z3Y9 468 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 TRIM46Q7Z4K8 759 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 IL27Q8NEV9 243 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 DCPSQ96C86 337 aaKnown RBP8.75□□□□□ -1.01
HDAC3-209ENST00000486618 FKBPLQ9UIM3 349 aa8.75□□□□□ -1.01
HDAC3-209ENST00000486618 FAM155AB1AL88 458 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-209ENST00000486618 TRPA1O75762 1119 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 TIMP2P16035 220 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 RFC5P40937 340 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 GRM5P41594 1212 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 GRAPQ13588 217 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 CTU1Q7Z7A3 348 aaKnown RBP8.74□□□□□ -1.01
HDAC3-209ENST00000486618 SLC51AQ86UW1 340 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 GRAPLQ8TC17 118 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-209ENST00000486618 RNF186Q9NXI6 227 aa8.74□□□□□ -1.01
HDAC3-209ENST00000486618 NR3C2P08235 984 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 USP17L8P0C7I0 530 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 RPS12P25398 132 aaKnown RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 WDR4P57081 412 aaKnown RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 PKN2Q16513 984 aaKnown RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 WASHC4Q2M389 1173 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 TBC1D10BQ4KMP7 808 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 TRMT44Q8IYL2 757 aaKnown RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 KIFC2Q96AC6 838 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 PCMTD1Q96MG8 357 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 KLF16Q9BXK1 252 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 HMX1Q9NP08 348 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-209ENST00000486618 ANKRD36CQ5JPF3 1778 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 KDM3BQ7LBC6 1761 aa8.73□□□□□ -1.01
HDAC3-209ENST00000486618 SHTN1A0MZ66 631 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 YDJCA8MPS7 323 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 PSMD14O00487 310 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 MAFGO15525 162 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 HCLS1P14317 486 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-209ENST00000486618 PPP2R1AP30153 589 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 NR5A1Q13285 461 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 PDXDC2PQ6P474 469 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 CCER1Q8TC90 406 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-209ENST00000486618 EPS8L1Q8TE68 723 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 CSRNP1Q96S65 589 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 PNNQ9H307 717 aaKnown RBP8.72□□□□□ -1.01
HDAC3-209ENST00000486618 TRMT112Q9UI30 125 aaKnown RBP8.72□□□□□ -1.01
HDAC3-209ENST00000486618 MAP4K5Q9Y4K4 846 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 SH3TC1Q8TE82 1336 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 DLG5Q8TDM6 1919 aa8.72□□□□□ -1.01
HDAC3-209ENST00000486618 TNRC18O15417 2968 aaPredicted RBP8.71□□□□□ -1.01
HDAC3-209ENST00000486618 EIF2S2P20042 333 aaKnown RBP8.71□□□□□ -1.02
HDAC3-209ENST00000486618 FSHRP23945 695 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 DLK2Q6UY11 383 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 NLRP10Q86W26 655 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 GCC1Q96CN9 775 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 EYA3Q99504 573 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 THUMPD2Q9BTF0 503 aaKnown RBP8.71□□□□□ -1.02
HDAC3-209ENST00000486618 HDAC9Q9UKV0 1011 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 NSFL1CQ9UNZ2 370 aaKnown RBP8.71□□□□□ -1.02
HDAC3-209ENST00000486618 LAMB2P55268 1798 aa8.71□□□□□ -1.02
HDAC3-209ENST00000486618 ADM5C9JUS6 153 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 FKBP1BP68106 108 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 TCIRG1Q13488 830 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 NFE2L2Q16236 605 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 KIF4BQ2VIQ3 1234 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 VASH1Q7L8A9 365 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-209ENST00000486618 ITPKCQ96DU7 683 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 ARHGAP9Q9BRR9 750 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 DBNDD1Q9H9R9 158 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 TSPYL4Q9UJ04 414 aa8.7□□□□□ -1.02
HDAC3-209ENST00000486618 TAF1P21675 1872 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 ECE2O60344 883 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 ZIC2O95409 532 aaPredicted RBP8.69□□□□□ -1.02
HDAC3-209ENST00000486618 AIMP1Q12904 312 aaKnown RBP8.69□□□□□ -1.02
HDAC3-209ENST00000486618 LCE2AQ5TA79 106 aaPredicted RBP8.69□□□□□ -1.02
HDAC3-209ENST00000486618 COPS6Q7L5N1 327 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 LRP10Q7Z4F1 713 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 CDCA5Q96FF9 252 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 OCSTAMPQ9BR26 566 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 ZC3H12CQ9C0D7 883 aaKnown RBP8.69□□□□□ -1.02
HDAC3-209ENST00000486618 ZFAND3Q9H8U3 227 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 GGA3Q9NZ52 723 aa8.69□□□□□ -1.02
HDAC3-209ENST00000486618 EGFRP00533 1210 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 VIL1P09327 827 aaKnown RBP8.68□□□□□ -1.02
HDAC3-209ENST00000486618 ANAPC15P60006 121 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 FLIIQ13045 1269 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 SF3B3Q15393 1217 aaKnown RBP8.68□□□□□ -1.02
HDAC3-209ENST00000486618 MRPL14Q6P1L8 145 aaKnown RBP8.68□□□□□ -1.02
HDAC3-209ENST00000486618 TREML4Q6UXN2 200 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 RASAL3Q86YV0 1011 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 ANKRD13AQ8IZ07 590 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 XAGE3Q8WTP9 111 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 ZFP42Q96MM3 310 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 BABAM1Q9NWV8 329 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 MAPK8IP3Q9UPT6 1336 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 LRRC37AA6NMS7 1700 aa8.68□□□□□ -1.02
HDAC3-209ENST00000486618 ANXA1P04083 346 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 MCCP23508 829 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 GPSM2P81274 684 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 PROSER3Q2NL68 480 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 TMEM259Q4ZIN3 620 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 HSP90AB4PQ58FF6 505 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 NOM1Q5C9Z4 860 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms