RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 SLURP2P0DP57 97 aa21.58■■□□□ 1.05
COL6A1-204ENST00000486023 CCL15Q16663 113 aa21.58■■□□□ 1.05
COL6A1-204ENST00000486023 PTPN18Q99952 460 aa21.58■■□□□ 1.05
COL6A1-204ENST00000486023 PIH1D3Q9NQM4 214 aaKnown RBP21.58■■□□□ 1.05
COL6A1-204ENST00000486023 AATFQ9NY61 560 aaKnown RBP eCLIP21.58■■□□□ 1.05
COL6A1-204ENST00000486023 DDTLA6NHG4 134 aaPredicted RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 IDH1O75874 414 aaKnown RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 IFIT2P09913 472 aaKnown RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 GTF2A2P52657 109 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 RHBDL3P58872 404 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 SH3BP5LQ7L8J4 393 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 ERO1BQ86YB8 467 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 TEX11Q8IYF3 940 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 CLASRPQ8N2M8 674 aaKnown RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 SH3RF3Q8TEJ3 882 aaPredicted RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 KIF1BPQ96EK5 621 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 RPAP1Q9BWH6 1393 aaPredicted RBP21.57■■□□□ 1.04
COL6A1-204ENST00000486023 AKAP11Q9UKA4 1901 aa21.57■■□□□ 1.04
COL6A1-204ENST00000486023 SPDYE5A6NIY4 337 aa21.56■■□□□ 1.04
COL6A1-204ENST00000486023 MS4A4AQ96JQ5 239 aa21.56■■□□□ 1.04
COL6A1-204ENST00000486023 ZNF512BQ96KM6 892 aaPredicted RBP21.56■■□□□ 1.04
COL6A1-204ENST00000486023 IRF6O14896 467 aa21.55■■□□□ 1.04
COL6A1-204ENST00000486023 FKTNO75072 461 aa21.55■■□□□ 1.04
COL6A1-204ENST00000486023 BAG3O95817 575 aa21.55■■□□□ 1.04
COL6A1-204ENST00000486023 CTU1Q7Z7A3 348 aaKnown RBP21.55■■□□□ 1.04
COL6A1-204ENST00000486023 BRI3BPQ8WY22 251 aa21.55■■□□□ 1.04
COL6A1-204ENST00000486023 ANTXR1Q9H6X2 564 aa21.55■■□□□ 1.04
COL6A1-204ENST00000486023 RAB11FIP3O75154 756 aa21.54■■□□□ 1.04
COL6A1-204ENST00000486023 CYP7A1P22680 504 aa21.54■■□□□ 1.04
COL6A1-204ENST00000486023 MYH2Q9UKX2 1941 aa21.54■■□□□ 1.04
COL6A1-204ENST00000486023 TESPA1A2RU30 521 aaPredicted RBP21.53■■□□□ 1.04
COL6A1-204ENST00000486023 FAM196BA6NMK8 535 aa21.53■■□□□ 1.04
COL6A1-204ENST00000486023 CRHR2Q13324 411 aa21.53■■□□□ 1.04
COL6A1-204ENST00000486023 ADGRA1Q86SQ6 560 aa21.53■■□□□ 1.04
COL6A1-204ENST00000486023 DNAJC2Q99543 621 aaKnown RBP21.53■■□□□ 1.04
COL6A1-204ENST00000486023 ZNF112Q9UJU3 913 aa21.53■■□□□ 1.04
COL6A1-204ENST00000486023 SMARCA5O60264 1052 aaPredicted RBP21.52■■□□□ 1.04
COL6A1-204ENST00000486023 CETPP11597 493 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 DYNLL1P63167 89 aaKnown RBP21.52■■□□□ 1.04
COL6A1-204ENST00000486023 PPATQ06203 517 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 PPIL2Q13356 520 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 SNAPC2Q13487 334 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 MAPKAPK5Q8IW41 473 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 FAM43AQ8N2R8 423 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 MAGEB6Q8N7X4 407 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 MIGA1Q8NAN2 632 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 TGFBRAP1Q8WUH2 860 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 PICK1Q9NRD5 415 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 AK9Q5TCS8 1911 aa21.52■■□□□ 1.04
COL6A1-204ENST00000486023 TAF1CQ15572 869 aaPredicted RBP21.51■■□□□ 1.03
COL6A1-204ENST00000486023 OSBPL5Q9H0X9 879 aaPredicted RBP21.51■■□□□ 1.03
COL6A1-204ENST00000486023 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.51■■□□□ 1.03
COL6A1-204ENST00000486023 PLCG2P16885 1265 aa21.5■■□□□ 1.03
COL6A1-204ENST00000486023 MAP3K12Q12852 859 aa21.5■■□□□ 1.03
COL6A1-204ENST00000486023 SLC4A8Q2Y0W8 1093 aa21.5■■□□□ 1.03
COL6A1-204ENST00000486023 ZHX2Q9Y6X8 837 aa21.5■■□□□ 1.03
COL6A1-204ENST00000486023 RFX7Q2KHR2 1363 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 OTOFQ9HC10 1997 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 PHF20L1A8MW92 1017 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 MAP4K4O95819 1239 aaPredicted RBP21.49■■□□□ 1.03
COL6A1-204ENST00000486023 SCYL3Q8IZE3 742 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 CFHR5Q9BXR6 569 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 ZFYVE28Q9HCC9 887 aa21.49■■□□□ 1.03
COL6A1-204ENST00000486023 SAP30BPQ9UHR5 308 aaKnown RBP21.49■■□□□ 1.03
COL6A1-204ENST00000486023 BTBD19C9JJ37 291 aa21.48■■□□□ 1.03
COL6A1-204ENST00000486023 GOLIM4O00461 696 aa21.48■■□□□ 1.03
COL6A1-204ENST00000486023 ECM2O94769 699 aaPredicted RBP21.48■■□□□ 1.03
COL6A1-204ENST00000486023 RRP1P56182 461 aaKnown RBP21.48■■□□□ 1.03
COL6A1-204ENST00000486023 PPP4CP60510 307 aa21.48■■□□□ 1.03
COL6A1-204ENST00000486023 LRRCC1Q9C099 1032 aa21.48■■□□□ 1.03
COL6A1-204ENST00000486023 BOLA2Q9H3K6 86 aa21.48■■□□□ 1.03
COL6A1-204ENST00000486023 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.48■■□□□ 1.03
COL6A1-204ENST00000486023 NOL9Q5SY16 702 aaKnown RBP21.47■■□□□ 1.03
COL6A1-204ENST00000486023 CCDC84Q86UT8 332 aaPredicted RBP21.47■■□□□ 1.03
COL6A1-204ENST00000486023 CD99L2Q8TCZ2 262 aa21.47■■□□□ 1.03
COL6A1-204ENST00000486023 EDC3Q96F86 508 aaKnown RBP21.47■■□□□ 1.03
COL6A1-204ENST00000486023 TRIM17Q9Y577 477 aa21.47■■□□□ 1.03
COL6A1-204ENST00000486023 ATRNL1Q5VV63 1379 aa21.47■■□□□ 1.03
COL6A1-204ENST00000486023 CTNND1O60716 968 aaKnown RBP21.46■■□□□ 1.03
COL6A1-204ENST00000486023 NPM3O75607 178 aaKnown RBP21.46■■□□□ 1.03
COL6A1-204ENST00000486023 USP5P45974 858 aa21.46■■□□□ 1.03
COL6A1-204ENST00000486023 SP3Q02447 781 aa21.46■■□□□ 1.03
COL6A1-204ENST00000486023 TTF1Q15361 905 aaPredicted RBP21.46■■□□□ 1.03
COL6A1-204ENST00000486023 NOM1Q5C9Z4 860 aaKnown RBP21.46■■□□□ 1.03
COL6A1-204ENST00000486023 TRIM34Q9BYJ4 488 aa21.46■■□□□ 1.03
COL6A1-204ENST00000486023 PALD1Q9ULE6 856 aa21.46■■□□□ 1.03
COL6A1-204ENST00000486023 PTPRAP18433 802 aa21.45■■□□□ 1.02
COL6A1-204ENST00000486023 MAP3K10Q02779 954 aa21.45■■□□□ 1.02
COL6A1-204ENST00000486023 SLC9C2Q5TAH2 1124 aa21.45■■□□□ 1.02
COL6A1-204ENST00000486023 CRACR2BQ8N4Y2 399 aaPredicted RBP21.45■■□□□ 1.02
COL6A1-204ENST00000486023 PI4KBQ9UBF8 816 aa21.45■■□□□ 1.02
COL6A1-204ENST00000486023 TRIM75PA6NK02 468 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 PDHXO00330 501 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 GADL1Q6ZQY3 521 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 ERO1AQ96HE7 468 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 CRBNQ96SW2 442 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 DHX36Q9H2U1 1008 aaKnown RBP21.44■■□□□ 1.02
COL6A1-204ENST00000486023 FLT1P17948 1338 aa21.44■■□□□ 1.02
COL6A1-204ENST00000486023 TBC1D12O60347 775 aa21.43■■□□□ 1.02
COL6A1-204ENST00000486023 PKN2Q16513 984 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms