RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PIM2Q9P1W9 311 aa7.16□□□□□ -1.26
VPS41-213ENST00000485955 TTF2Q9UNY4 1162 aaKnown RBP7.16□□□□□ -1.26
VPS41-213ENST00000485955 SAMM50Q9Y512 469 aa7.16□□□□□ -1.26
VPS41-213ENST00000485955 CSADQ9Y600 493 aa7.16□□□□□ -1.26
VPS41-213ENST00000485955 TRIM37O94972 964 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 CDK5R2Q13319 367 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 MEI1Q5TIA1 1274 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 LLGL2Q6P1M3 1020 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 SV2BQ7L1I2 683 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 ZNF765Q7L2R6 523 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 NBPF11Q86T75 865 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 SMYD4Q8IYR2 804 aaPredicted RBP7.15□□□□□ -1.26
VPS41-213ENST00000485955 PIDD1Q9HB75 910 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 LEMD3Q9Y2U8 911 aa7.15□□□□□ -1.26
VPS41-213ENST00000485955 DCDC2CA8MYV0 355 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 RNGTTO60942 597 aaKnown RBP7.14□□□□□ -1.27
VPS41-213ENST00000485955 CTSHP09668 335 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 SPINK2P20155 84 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 GRIK1P39086 918 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 ERVK-24P63145 666 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 FGD1P98174 961 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 INTS5Q6P9B9 1019 aaKnown RBP7.14□□□□□ -1.27
VPS41-213ENST00000485955 C12orf40Q86WS4 652 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 DTX1Q86Y01 620 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 GIMAP7Q8NHV1 300 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 ISL2Q96A47 359 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 CYP8B1Q9UNU6 501 aa7.14□□□□□ -1.27
VPS41-213ENST00000485955 FOSL1P15407 271 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 NTF4P34130 210 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 RING1Q06587 406 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 PSMD2Q13200 908 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 INPP5AQ14642 412 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 LRRC14Q15048 493 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 CCDC85BQ15834 202 aaPredicted RBP7.13□□□□□ -1.27
VPS41-213ENST00000485955 PPM1JQ5JR12 505 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 OGFOD3Q6PK18 319 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 TMC4Q7Z404 712 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 RNF214Q8ND24 703 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 PCDHA4Q9UN74 947 aa7.13□□□□□ -1.27
VPS41-213ENST00000485955 TTBK2Q6IQ55 1244 aa7.12□□□□□ -1.27
VPS41-213ENST00000485955 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.12□□□□□ -1.27
VPS41-213ENST00000485955 UBE3DQ7Z6J8 389 aa7.12□□□□□ -1.27
VPS41-213ENST00000485955 METTL22Q9BUU2 404 aaPredicted RBP7.12□□□□□ -1.27
VPS41-213ENST00000485955 PCOLCE2Q9UKZ9 415 aa7.12□□□□□ -1.27
VPS41-213ENST00000485955 CYP26A1O43174 497 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 CDK8P49336 464 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 HNRNPUQ00839 825 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS41-213ENST00000485955 XPCQ01831 940 aaPredicted RBP7.11□□□□□ -1.27
VPS41-213ENST00000485955 MAP3K11Q16584 847 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 MSMPQ1L6U9 139 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 DUSP27Q5VZP5 1158 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 GAL3ST3Q96A11 431 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 PSMG3-AS1Q96PY0 264 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 LRRC4CQ9HCJ2 640 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 PCDHB5Q9Y5E4 795 aa7.11□□□□□ -1.27
VPS41-213ENST00000485955 LEFTY1O75610 366 aa7.1□□□□□ -1.27
VPS41-213ENST00000485955 FAM87AP0C7U9 286 aa7.1□□□□□ -1.27
VPS41-213ENST00000485955 CPSF6Q16630 551 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS41-213ENST00000485955 SCARA3Q6AZY7 606 aa7.1□□□□□ -1.27
VPS41-213ENST00000485955 LRFN4Q6PJG9 635 aa7.1□□□□□ -1.27
VPS41-213ENST00000485955 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS41-213ENST00000485955 SSU72Q9NP77 194 aaKnown RBP7.1□□□□□ -1.27
VPS41-213ENST00000485955 USP31Q70CQ4 1352 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 ERCC3P19447 782 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 CYP27A1Q02318 531 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 TAF1CQ15572 869 aaPredicted RBP7.09□□□□□ -1.27
VPS41-213ENST00000485955 ZBTB37Q5TC79 503 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 AGMOQ6ZNB7 445 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 KRTAP4-8Q9BYQ9 185 aa7.09□□□□□ -1.27
VPS41-213ENST00000485955 ZC3H7BQ9UGR2 993 aaKnown RBP7.09□□□□□ -1.27
VPS41-213ENST00000485955 LIG3P49916 1009 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 SEPT6Q14141 434 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 NFXL1Q6ZNB6 911 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 CYFIP1Q7L576 1253 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 PLPPR2Q96GM1 343 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 DUSP23Q9BVJ7 150 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 U3KQE9 123 aa7.08□□□□□ -1.28
VPS41-213ENST00000485955 SORBS3O60504 671 aa7.07□□□□□ -1.28
VPS41-213ENST00000485955 TFE3P19532 575 aaPredicted RBP7.07□□□□□ -1.28
VPS41-213ENST00000485955 GP2P55259 537 aaKnown RBP7.07□□□□□ -1.28
VPS41-213ENST00000485955 RPS26P62854 115 aaKnown RBP7.07□□□□□ -1.28
VPS41-213ENST00000485955 ELMO3Q96BJ8 720 aa7.07□□□□□ -1.28
VPS41-213ENST00000485955 PICK1Q9NRD5 415 aa7.07□□□□□ -1.28
VPS41-213ENST00000485955 TLR6Q9Y2C9 796 aa7.07□□□□□ -1.28
VPS41-213ENST00000485955 OAS3Q9Y6K5 1087 aaKnown RBP7.07□□□□□ -1.28
VPS41-213ENST00000485955 F6X3S4 739 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 FANCGO15287 622 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 WNT11O96014 354 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 ST13P50502 369 aaKnown RBP7.06□□□□□ -1.28
VPS41-213ENST00000485955 CYP27C1Q4G0S4 372 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 FAM181AQ8N9Y4 354 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 NOC4LQ9BVI4 516 aaKnown RBP7.06□□□□□ -1.28
VPS41-213ENST00000485955 CCDC39Q9UFE4 941 aa7.06□□□□□ -1.28
VPS41-213ENST00000485955 PRAMEF27A3QJZ7 478 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 GFRA2O00451 464 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 PRNPP04156 253 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 WIPI1Q5MNZ9 446 aaPredicted RBP7.05□□□□□ -1.28
VPS41-213ENST00000485955 HDXQ7Z353 690 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 TOP6BLQ8N6T0 577 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 BCL2L13Q9BXK5 485 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms