RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 GUCY2CP25092 1073 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 RBL2Q08999 1139 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 IMMTQ16891 758 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 IGSF22Q8N9C0 903 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 RNF40O75150 1001 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 ABL1P00519 1130 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 IFIT1P09914 478 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 PRR29P0C7W0 189 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 RFX5P48382 616 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 CORO7P57737 925 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 KRT40Q6A162 431 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 NOA1Q8NC60 698 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 ACRBPQ8NEB7 543 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 ACBD3Q9H3P7 528 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 MYH15Q9Y2K3 1946 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 A0A087WZG4 1122 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 USP5P45974 858 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 LMBR1LQ6UX01 489 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 MSANTD4Q8NCY6 345 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 YY1AP1Q9H869 796 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 NWD1Q149M9 1564 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 PTPRUQ92729 1446 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 RESP18Q5W5W9 173 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 NUTM2AQ8IVF1 878 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 RIN2Q8WYP3 895 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 OSBP2Q969R2 916 aa21.4■■□□□ 1.02
CCDC88B-207ENST00000479965 POLR2DO15514 142 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 TTC39AQ5SRH9 613 aa21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 NCAPH2Q6IBW4 605 aa21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 RNF113AO15541 343 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 LTKP29376 864 aa21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 POSTNQ15063 836 aa21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 GBP3Q9H0R5 595 aa21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 GEMIN8Q9NWZ8 242 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-207ENST00000479965 PDIA6Q15084 440 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 MICU3Q86XE3 530 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 PPP6R2O75170 966 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 TRDNQ13061 729 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 PTPAQ15257 358 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 AFAP1L1Q8TED9 768 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 MYO1BO43795 1136 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 TRIM29Q14134 588 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 ANKRD24Q8TF21 1146 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 SERTAD1Q9UHV2 236 aa21.38■■□□□ 1.01
CCDC88B-207ENST00000479965 DNAJC21Q5F1R6 531 aaKnown RBP21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 SLC9C2Q5TAH2 1124 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 METTL22Q9BUU2 404 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 BRMS1Q9HCU9 246 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 RICTORQ6R327 1708 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 UBE2Q2LH0YL09 131 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 FGAP02671 866 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 GRIN1Q05586 938 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 ANKRD13DQ6ZTN6 518 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 DENND2AQ9ULE3 1009 aa21.37■■□□□ 1.01
CCDC88B-207ENST00000479965 RFX7Q2KHR2 1363 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 RPS6KA5O75582 802 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 ZNF18P17022 549 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 NAPGQ99747 312 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 CASP14P31944 242 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 METAP2P50579 478 aaKnown RBP eCLIP21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 NCOA7Q8NI08 942 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 IP6K1Q92551 441 aa21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 SMARCC1Q92922 1105 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 MYCBPQ99417 103 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-207ENST00000479965 COBLO75128 1261 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 PPFIA4O75335 1185 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 ZMYND10O75800 440 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 LIG3P49916 1009 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 NR1I3Q14994 352 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 DACH1Q9UI36 760 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 ANTXR2P58335 489 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 ENOX1Q8TC92 643 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 HINFPQ9BQA5 517 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 ARHGEF25Q86VW2 580 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 KRI1Q8N9T8 703 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 MLKLQ8NB16 471 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 NCAPGQ9BPX3 1015 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 MYL10Q9BUA6 226 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 MED4Q9NPJ6 270 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 PALLDQ8WX93 1383 aa21.35■■□□□ 1.01
CCDC88B-207ENST00000479965 ZNF213O14771 459 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 PIP4K2BP78356 416 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 PANX2Q96RD6 677 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 ANKARQ7Z5J8 1434 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 TADA2BQ86TJ2 420 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 MED15Q96RN5 788 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 MAP3K14Q99558 947 aa21.34■■□□□ 1.01
CCDC88B-207ENST00000479965 EFCAB13Q8IY85 973 aa21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 CCDC148Q8NFR7 591 aa21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 ENC1O14682 589 aa21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 CPLX2Q6PUV4 134 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 NFXL1Q6ZNB6 911 aa21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 MB21D2Q8IYB1 491 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 ZNF594Q96JF6 807 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 TMEM2Q9UHN6 1383 aa21.33■■□□□ 1.01
CCDC88B-207ENST00000479965 CCT6AP40227 531 aaKnown RBP21.33■■□□□ 1
CCDC88B-207ENST00000479965 CCDC82Q8N4S0 544 aa21.33■■□□□ 1
CCDC88B-207ENST00000479965 ADAMTS13Q76LX8 1427 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 AFMP43652 599 aa21.32■■□□□ 1
CCDC88B-207ENST00000479965 CCT5P48643 541 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms