RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ATP8B2P98198 1209 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 RABL6Q3YEC7 729 aaPredicted RBP8.27□□□□□ -1.09
USP48-208ENST00000479177 PARP10Q53GL7 1025 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 EPHA10Q5JZY3 1008 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 Q6ZVU0 165 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 DEFB132Q7Z7B7 95 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 SMC5Q8IY18 1101 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 ZBTB38Q8NAP3 1195 aaPredicted RBP8.27□□□□□ -1.09
USP48-208ENST00000479177 SSH3Q8TE77 659 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 JARID2Q92833 1246 aaPredicted RBP8.27□□□□□ -1.09
USP48-208ENST00000479177 NIP7Q9Y221 180 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP48-208ENST00000479177 PCDHB11Q9Y5F2 797 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 LRP5O75197 1615 aa8.27□□□□□ -1.09
USP48-208ENST00000479177 PIK3CDO00329 1044 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 NTSR2O95665 410 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 RELBQ01201 579 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 SUSD4Q5VX71 490 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 TBC1D9BQ66K14 1250 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 PPP1R42Q7Z4L9 355 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 CCDC125Q86Z20 511 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 PHTF2Q8N3S3 785 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 SVOPQ8N4V2 548 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 KDF1Q8NAX2 398 aaPredicted RBP8.26□□□□□ -1.09
USP48-208ENST00000479177 PLA2G12BQ9BX93 195 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 TFCP2L1Q9NZI6 479 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 PNPLA7Q6ZV29 1317 aa8.26□□□□□ -1.09
USP48-208ENST00000479177 CARMIL3Q8ND23 1372 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 ABCC12Q96J65 1359 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 TNRC6CQ9HCJ0 1690 aaKnown RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 SRGAP3O43295 1099 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 ARHGEF15O94989 841 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 GYS1P13807 737 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 MCCD1P59942 119 aaPredicted RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 FOXO4P98177 505 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 SEMA3FQ13275 785 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.25□□□□□ -1.09
USP48-208ENST00000479177 SYNE4Q8N205 404 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 FLAD1Q8NFF5 587 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 NANOS1Q8WY41 292 aaKnown RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 GCC1Q96CN9 775 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 FAM89AQ96GI7 184 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 UTP14AQ9BVJ6 771 aaKnown RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 DCTPP1Q9H773 170 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 STK32BQ9NY57 414 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 TRMT112Q9UI30 125 aaKnown RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 DNMT3AQ9Y6K1 912 aaPredicted RBP8.25□□□□□ -1.09
USP48-208ENST00000479177 RIC1Q4ADV7 1423 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 NRXN2Q9P2S2 1712 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 SH3TC1Q8TE82 1336 aa8.25□□□□□ -1.09
USP48-208ENST00000479177 TTLL8A6PVC2 850 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 IRS4O14654 1257 aaPredicted RBP8.24□□□□□ -1.09
USP48-208ENST00000479177 RFX5P48382 616 aaPredicted RBP8.24□□□□□ -1.09
USP48-208ENST00000479177 NUCB1Q02818 461 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 NFIXQ14938 502 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 SLC15A2Q16348 729 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 BICDL1Q6ZP65 573 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 COL23A1Q86Y22 540 aaPredicted RBP8.24□□□□□ -1.09
USP48-208ENST00000479177 CCDC155Q8N6L0 562 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 ALG2Q9H553 416 aa8.24□□□□□ -1.09
USP48-208ENST00000479177 ZNF395Q9H8N7 513 aaPredicted RBP8.24□□□□□ -1.09
USP48-208ENST00000479177 FAM177BA6PVY3 158 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 CTSWP56202 376 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 RNF20Q5VTR2 975 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 LMBR1LQ6UX01 489 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 SKAP1Q86WV1 359 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 RNF135Q8IUD6 432 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 SETDB2Q96T68 719 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 TSEN34Q9BSV6 310 aaKnown RBP8.23□□□□□ -1.09
USP48-208ENST00000479177 EXOC6BQ9Y2D4 811 aa8.23□□□□□ -1.09
USP48-208ENST00000479177 NOP58Q9Y2X3 529 aaKnown RBP8.23□□□□□ -1.09
USP48-208ENST00000479177 RTL9Q8NET4 1388 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 ANKRD31Q8N7Z5 1873 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 PDE8AO60658 829 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 ADH1AP07327 375 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 CSF1RP07333 972 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 SLURP2P0DP57 97 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 HCLS1P14317 486 aaPredicted RBP8.22□□□□□ -1.09
USP48-208ENST00000479177 ERVK-9P63128 1117 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 DDR1Q08345 913 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 SLFNL1Q499Z3 407 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 XP32Q5T750 250 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 NBPF5PQ86XG9 351 aaPredicted RBP8.22□□□□□ -1.09
USP48-208ENST00000479177 VWA5B2Q8N398 1253 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 NYXQ9GZU5 481 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 PA2G4Q9UQ80 394 aaKnown RBP8.22□□□□□ -1.09
USP48-208ENST00000479177 SPEF2Q9C093 1822 aa8.22□□□□□ -1.09
USP48-208ENST00000479177 COL4A1P02462 1669 aa8.21□□□□□ -1.09
USP48-208ENST00000479177 A0A1B0GUL6 1792 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 POLRMTO00411 1230 aaKnown RBP8.21□□□□□ -1.1
USP48-208ENST00000479177 SURF6O75683 361 aaKnown RBP8.21□□□□□ -1.1
USP48-208ENST00000479177 HSP90B1P14625 803 aaKnown RBP8.21□□□□□ -1.1
USP48-208ENST00000479177 TM4SF1P30408 202 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 PTPN12Q05209 780 aaKnown RBP8.21□□□□□ -1.1
USP48-208ENST00000479177 HSP90AB4PQ58FF6 505 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 SLC10A5Q5PT55 438 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 CHD1LQ86WJ1 897 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 CNBD1Q8NA66 436 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 TTLL11Q8NHH1 800 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 ZNF592Q92610 1267 aa8.21□□□□□ -1.1
USP48-208ENST00000479177 INSM2Q96T92 566 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms