RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 RFX7Q2KHR2 1363 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 ATRNL1Q5VV63 1379 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 MGAMO43451 1857 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 CXCL11O14625 94 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 GORABQ5T7V8 394 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 ARHGAP45Q92619 1136 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 SRRDQ9UH36 339 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 ZHX2Q9Y6X8 837 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 BRCA2P51587 3418 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 MROH7-TTC4A0A0A0MT08 1334 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 MYPNQ86TC9 1320 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 ADGRA2Q96PE1 1338 aa16.38■□□□□ 0.21
VCL-205ENST00000478896 PTPRFP10586 1907 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 ZBTB22O15209 634 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 CYP2C8P10632 490 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 OSBPP22059 807 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 CTGFP29279 349 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 GADL1Q6ZQY3 521 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 FASTKD5Q7L8L6 764 aaKnown RBP16.37■□□□□ 0.21
VCL-205ENST00000478896 TRIM47Q96LD4 638 aa16.37■□□□□ 0.21
VCL-205ENST00000478896 DDTLA6NHG4 134 aaPredicted RBP16.36■□□□□ 0.21
VCL-205ENST00000478896 PHF20L1A8MW92 1017 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 IPO8O15397 1037 aaKnown RBP16.36■□□□□ 0.21
VCL-205ENST00000478896 PTPRAP18433 802 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 GRK4P32298 578 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 FCGRTP55899 365 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 MECOMQ03112 1051 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 MOGSQ13724 837 aa16.36■□□□□ 0.21
VCL-205ENST00000478896 HABP4Q5JVS0 413 aaKnown RBP16.36■□□□□ 0.21
VCL-205ENST00000478896 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
VCL-205ENST00000478896 DDX4Q9NQI0 724 aaKnown RBP16.36■□□□□ 0.21
VCL-205ENST00000478896 MKI67P46013 3256 aaKnown RBP16.35■□□□□ 0.21
VCL-205ENST00000478896 A0A0G2JLL6 359 aaPredicted RBP16.35■□□□□ 0.21
VCL-205ENST00000478896 CCER2I3L3R5 266 aa16.35■□□□□ 0.21
VCL-205ENST00000478896 MTX1Q13505 466 aa16.35■□□□□ 0.21
VCL-205ENST00000478896 GPAT2Q6NUI2 795 aa16.35■□□□□ 0.21
VCL-205ENST00000478896 SH3BP5LQ7L8J4 393 aa16.35■□□□□ 0.21
VCL-205ENST00000478896 PRRT2Q7Z6L0 340 aaPredicted RBP16.35■□□□□ 0.21
VCL-205ENST00000478896 FAM163AQ96GL9 167 aaPredicted RBP16.35■□□□□ 0.21
VCL-205ENST00000478896 BIN2Q9UBW5 565 aaPredicted RBP16.35■□□□□ 0.21
VCL-205ENST00000478896 PHIPQ8WWQ0 1821 aa16.35■□□□□ 0.21
VCL-205ENST00000478896 ATAD5Q96QE3 1844 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 TRIM75PA6NK02 468 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 CTNND1O60716 968 aaKnown RBP16.34■□□□□ 0.21
VCL-205ENST00000478896 GNAI2P04899 355 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 TRIM27P14373 513 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 UBXN2AP68543 259 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 GSTO1P78417 241 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 PRKCZQ05513 592 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 G3BP1Q13283 466 aaKnown RBP eCLIP16.34■□□□□ 0.213e-6■■■■□ 19.9
VCL-205ENST00000478896 MTFR1Q15390 333 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 SPATA5Q8NB90 893 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 SMCR8Q8TEV9 937 aaPredicted RBP16.34■□□□□ 0.21
VCL-205ENST00000478896 RAI14Q9P0K7 980 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 AFG3L2Q9Y4W6 797 aa16.34■□□□□ 0.21
VCL-205ENST00000478896 GPR75-ASB3A0A0A6YYF3 556 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 LDHCP07864 332 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 SLURP2P0DP57 97 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 BCRP11274 1271 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 PI16Q6UXB8 463 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 ATF7IPQ6VMQ6 1270 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 NKX2-3Q8TAU0 364 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 CLUAP1Q96AJ1 413 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.33■□□□□ 0.2
VCL-205ENST00000478896 HMG20BQ9P0W2 317 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.33■□□□□ 0.2
VCL-205ENST00000478896 MAST2Q6P0Q8 1798 aa16.33■□□□□ 0.2
VCL-205ENST00000478896 RHBDL3P58872 404 aa16.32■□□□□ 0.2
VCL-205ENST00000478896 NOL10Q9BSC4 688 aaKnown RBP16.32■□□□□ 0.2
VCL-205ENST00000478896 SLC45A1Q9Y2W3 748 aa16.32■□□□□ 0.2
VCL-205ENST00000478896 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.32■□□□□ 0.2
VCL-205ENST00000478896 PNMA6EA0A0J9YXQ4 647 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 FAM196BA6NMK8 535 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 BCAR3O75815 825 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 ARID4AP29374 1257 aaPredicted RBP16.31■□□□□ 0.2
VCL-205ENST00000478896 MAP3K10Q02779 954 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 TBC1D9Q6ZT07 1266 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 CCDC84Q86UT8 332 aaPredicted RBP16.31■□□□□ 0.2
VCL-205ENST00000478896 SLAIN1Q8ND83 568 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 NSUN4Q96CB9 384 aaKnown RBP16.31■□□□□ 0.2
VCL-205ENST00000478896 SHISA4Q96DD7 197 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 RNF208Q9H0X6 261 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 LRP2BPQ9P2M1 347 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 PNMA3Q9UL41 463 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 TNNQ9UQP3 1299 aa16.31■□□□□ 0.2
VCL-205ENST00000478896 TNPO2O14787 897 aaKnown RBP16.3■□□□□ 0.2
VCL-205ENST00000478896 TBC1D12O60347 775 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 UQCRFS1P1P0C7P4 283 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 CCL5P13501 91 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 MCAMP43121 646 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 OS9Q13438 667 aaPredicted RBP16.3■□□□□ 0.2
VCL-205ENST00000478896 ZNF384Q8TF68 577 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 OSBPL5Q9H0X9 879 aaPredicted RBP16.3■□□□□ 0.2
VCL-205ENST00000478896 TAOK2Q9UL54 1235 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 GABRQQ9UN88 632 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 AGTPBP1Q9UPW5 1226 aa16.3■□□□□ 0.2
VCL-205ENST00000478896 COL2A1P02458 1487 aaPredicted RBP16.29■□□□□ 0.2
VCL-205ENST00000478896 LOC285556D6RIA3 1793 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 NPM3O75607 178 aaKnown RBP16.29■□□□□ 0.2
VCL-205ENST00000478896 MAP4K4O95819 1239 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms