RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ARGLU1Q9NWB6 273 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 VPS54Q9P1Q0 977 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 GUCA1BQ9UMX6 200 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 COL3A1P02461 1466 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 XIRP1Q702N8 1843 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 DNAH12Q6ZR08 3092 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 SPATA31A6Q5VVP1 1343 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 BTBD18B2RXH4 712 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 ZNF500O60304 480 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 TPM1P09493 284 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 HSPD1P10809 573 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 DDIT3P35638 169 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 STOX1Q6ZVD7 989 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 C10orf67Q8IYJ2 551 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 CPVLQ9H3G5 476 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 GREM2Q9H772 168 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 SENP2Q9HC62 589 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 SLC4A4Q9Y6R1 1079 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 TMEM232C9JQI7 657 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 HGSO14964 777 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 ZBTB43O43298 467 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 MYO1BO43795 1136 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 IPO7O95373 1038 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 FGAP02671 866 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 CYP2E1P05181 493 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 MCM5P33992 734 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 EIF5P55010 431 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 CUL4AQ13619 759 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 FAM47AQ5JRC9 791 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 COL23A1Q86Y22 540 aaPredicted RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 NCOA7Q8NI08 942 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 RASGRP4Q8TDF6 673 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 OSBP2Q969R2 916 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 UBA5Q9GZZ9 404 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 CLSTN2Q9H4D0 955 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 ZSWIM6Q9HCJ5 1215 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 FANCLQ9NW38 375 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 SLURP2P0DP57 97 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 CASQ1P31415 396 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 SART3Q15020 963 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 HSP90B2PQ58FF3 399 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 RBM26Q5T8P6 1007 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 LRRN4CLQ8ND94 238 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 KIAA1524Q8TCG1 905 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 NOL10Q9BSC4 688 aaKnown RBP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 MXD3Q9BW11 206 aa5.72□□□□□ -1.49
CCDC39-204ENST00000476379 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.72□□□□□ -1.49
CCDC39-204ENST00000476379 KIAA1210Q9ULL0 1709 aa5.71□□□□□ -1.49
CCDC39-204ENST00000476379 EPB41L2O43491 1005 aaKnown RBP5.71□□□□□ -1.49
CCDC39-204ENST00000476379 LLGL1Q15334 1064 aa5.71□□□□□ -1.49
CCDC39-204ENST00000476379 PRIMPOLQ96LW4 560 aa5.71□□□□□ -1.49
CCDC39-204ENST00000476379 RPAP1Q9BWH6 1393 aaPredicted RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 NFAT5O94916 1531 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 IRS4O14654 1257 aaPredicted RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 ENC1O14682 589 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 N4BP3O15049 544 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 CYP7A1P22680 504 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 ITGA6P23229 1130 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 FANCCQ00597 558 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 GRM1Q13255 1194 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 NOM1Q5C9Z4 860 aaKnown RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 ZNF710Q8N1W2 664 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 SETDB2Q96T68 719 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 BCS1LQ9Y276 419 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 ATP10DQ9P241 1426 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 MACROD2A1Z1Q3 448 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 C6orf229H3BNL8 230 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 RNF113AO15541 343 aaKnown RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 PFKFB1P16118 471 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 KLRK1P26718 216 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 IL6STP40189 918 aaPredicted RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 PHKA1P46020 1223 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 EVCP57679 992 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 NLRP5P59047 1200 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 NECTIN1Q15223 517 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 DOK7Q18PE1 504 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 ZNF569Q5MCW4 686 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 CCDC102BQ68D86 513 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 INTS5Q6P9B9 1019 aaKnown RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 IPO4Q8TEX9 1081 aaKnown RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 MAP4K1Q92918 833 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 DEF6Q9H4E7 631 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 SEPT11Q9NVA2 429 aaKnown RBP5.71□□□□□ -1.5
CCDC39-204ENST00000476379 TFR2Q9UP52 801 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 NFE2L3Q9Y4A8 694 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 RGS12O14924 1447 aa5.71□□□□□ -1.5
CCDC39-204ENST00000476379 SMIM22K7EJ46 135 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 SSRP1Q08945 709 aaKnown RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 MFSD6Q6ZSS7 791 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 MTERF4Q7Z6M4 381 aaKnown RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 LRRC8AQ8IWT6 810 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 ANKRD13CQ8N6S4 541 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 METTL22Q9BUU2 404 aaPredicted RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 VPS18Q9P253 973 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 SAP30BPQ9UHR5 308 aaKnown RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 HOOK1Q9UJC3 728 aaKnown RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 V9GY48 417 aaPredicted RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 SLU7O95391 586 aaKnown RBP5.7□□□□□ -1.5
CCDC39-204ENST00000476379 BCAMP50895 628 aa5.7□□□□□ -1.5
CCDC39-204ENST00000476379 PTPN12Q05209 780 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms