RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 MROH7-TTC4A0A0A0MT08 1334 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 ADGRA2Q96PE1 1338 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 PDHXO00330 501 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 CAPN2P17655 700 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 ARID4AP29374 1257 aaPredicted RBP16.72■□□□□ 0.27
CHD3-209ENST00000473376 TBC1D2Q9BYX2 928 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 PICK1Q9NRD5 415 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 ABCF2Q9UG63 623 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 PTCH2Q9Y6C5 1203 aa16.72■□□□□ 0.27
CHD3-209ENST00000473376 COL2A1P02458 1487 aaPredicted RBP16.72■□□□□ 0.27
CHD3-209ENST00000473376 A0A0G2JLL6 359 aaPredicted RBP16.71■□□□□ 0.27
CHD3-209ENST00000473376 UQCRFS1P1P0C7P4 283 aa16.71■□□□□ 0.27
CHD3-209ENST00000473376 PTPRAP18433 802 aa16.71■□□□□ 0.27
CHD3-209ENST00000473376 G3BP1Q13283 466 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD3-209ENST00000473376 PRRT2Q7Z6L0 340 aaPredicted RBP16.71■□□□□ 0.27
CHD3-209ENST00000473376 SPATA5Q8NB90 893 aa16.71■□□□□ 0.27
CHD3-209ENST00000473376 AFG3L2Q9Y4W6 797 aa16.71■□□□□ 0.27
CHD3-209ENST00000473376 BTDP43251 543 aa16.7■□□□□ 0.26
CHD3-209ENST00000473376 MECOMQ03112 1051 aa16.7■□□□□ 0.26
CHD3-209ENST00000473376 ZFPM1Q8IX07 1006 aa16.7■□□□□ 0.26
CHD3-209ENST00000473376 HMG20BQ9P0W2 317 aa16.7■□□□□ 0.26
CHD3-209ENST00000473376 SRRDQ9UH36 339 aa16.7■□□□□ 0.26
CHD3-209ENST00000473376 RHBDL3P58872 404 aa16.69■□□□□ 0.26
CHD3-209ENST00000473376 ZKSCAN2Q63HK3 967 aa16.69■□□□□ 0.26
CHD3-209ENST00000473376 GPAT2Q6NUI2 795 aa16.69■□□□□ 0.26
CHD3-209ENST00000473376 SH3BP5LQ7L8J4 393 aa16.69■□□□□ 0.26
CHD3-209ENST00000473376 NSUN4Q96CB9 384 aaKnown RBP16.69■□□□□ 0.26
CHD3-209ENST00000473376 ZNF512BQ96KM6 892 aaPredicted RBP16.69■□□□□ 0.26
CHD3-209ENST00000473376 ZHX2Q9Y6X8 837 aa16.69■□□□□ 0.26
CHD3-209ENST00000473376 KIAA0100Q14667 2235 aaKnown RBP16.69■□□□□ 0.26
CHD3-209ENST00000473376 BCRP11274 1271 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 PSMC4P43686 418 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 POLA2Q14181 598 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 GORABQ5T7V8 394 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 TMED8Q6PL24 325 aaPredicted RBP16.68■□□□□ 0.26
CHD3-209ENST00000473376 ZSCAN29Q8IWY8 852 aaPredicted RBP16.68■□□□□ 0.26
CHD3-209ENST00000473376 NKX2-3Q8TAU0 364 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 NEUROD6Q96NK8 337 aa16.68■□□□□ 0.26
CHD3-209ENST00000473376 OSBPL5Q9H0X9 879 aaPredicted RBP16.68■□□□□ 0.26
CHD3-209ENST00000473376 MYH2Q9UKX2 1941 aa16.67■□□□□ 0.26
CHD3-209ENST00000473376 DDTLA6NHG4 134 aaPredicted RBP16.67■□□□□ 0.26
CHD3-209ENST00000473376 PLCG2P16885 1265 aa16.67■□□□□ 0.26
CHD3-209ENST00000473376 EN2P19622 333 aaPredicted RBP16.67■□□□□ 0.26
CHD3-209ENST00000473376 SSH3Q8TE77 659 aa16.67■□□□□ 0.26
CHD3-209ENST00000473376 ZNF384Q8TF68 577 aa16.67■□□□□ 0.26
CHD3-209ENST00000473376 ARHGAP39Q9C0H5 1083 aa16.67■□□□□ 0.26
CHD3-209ENST00000473376 DDX4Q9NQI0 724 aaKnown RBP16.67■□□□□ 0.26
CHD3-209ENST00000473376 PNMA6EA0A0J9YXQ4 647 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 BCAR3O75815 825 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 FCGRTP55899 365 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 ATP8B2P98198 1209 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 SLC4A8Q2Y0W8 1093 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 FRAT1Q92837 279 aaPredicted RBP16.66■□□□□ 0.26
CHD3-209ENST00000473376 TRIM47Q96LD4 638 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 DHX36Q9H2U1 1008 aaKnown RBP16.66■□□□□ 0.26
CHD3-209ENST00000473376 CPA4Q9UI42 421 aa16.66■□□□□ 0.26
CHD3-209ENST00000473376 HERC5Q9UII4 1024 aaKnown RBP16.66■□□□□ 0.26
CHD3-209ENST00000473376 NOP58Q9Y2X3 529 aaKnown RBP16.66■□□□□ 0.26
CHD3-209ENST00000473376 CENPFP49454 3210 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 FMNL1O95466 1100 aaPredicted RBP16.65■□□□□ 0.26
CHD3-209ENST00000473376 BAG3O95817 575 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 OSBPP22059 807 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 PPP4CP60510 307 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 CCDC158Q5M9N0 1113 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 CERS3Q8IU89 383 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 PROCA1Q8NCQ7 364 aaPredicted RBP16.65■□□□□ 0.26
CHD3-209ENST00000473376 GINM1Q9NU53 330 aa16.65■□□□□ 0.26
CHD3-209ENST00000473376 GRK4P32298 578 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 MCAMP43121 646 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 METTL16Q86W50 562 aaKnown RBP16.64■□□□□ 0.25
CHD3-209ENST00000473376 SLAIN1Q8ND83 568 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 RAET1EQ8TD07 263 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.64■□□□□ 0.25
CHD3-209ENST00000473376 LRP2BPQ9P2M1 347 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 PI4KBQ9UBF8 816 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 PNMA3Q9UL41 463 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 AGTPBP1Q9UPW5 1226 aa16.64■□□□□ 0.25
CHD3-209ENST00000473376 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.64■□□□□ 0.25
CHD3-209ENST00000473376 DOCK2Q92608 1830 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 AK9Q5TCS8 1911 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 CTGFP29279 349 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 PICALMQ13492 652 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 IRF5Q13568 498 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 TNNI3KQ59H18 835 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 TMEM57Q8N5G2 664 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 PXYLP1Q8TE99 480 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 NOL10Q9BSC4 688 aaKnown RBP16.63■□□□□ 0.25
CHD3-209ENST00000473376 RAI14Q9P0K7 980 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 FPGT-TNNI3KV9GXZ4 949 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 MYPNQ86TC9 1320 aa16.63■□□□□ 0.25
CHD3-209ENST00000473376 MKI67P46013 3256 aaKnown RBP16.62■□□□□ 0.25
CHD3-209ENST00000473376 GJB1P08034 283 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 CYP2C8P10632 490 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 CAP2P40123 477 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 UBXN2AP68543 259 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 PABPC4Q13310 644 aaKnown RBP eCLIP16.62■□□□□ 0.25
CHD3-209ENST00000473376 SH3TC2Q8TF17 1288 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 CLUAP1Q96AJ1 413 aa16.62■□□□□ 0.25
CHD3-209ENST00000473376 ZBTB7BO15156 539 aaPredicted RBP16.61■□□□□ 0.25
CHD3-209ENST00000473376 GJA8P48165 433 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms