RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 NAA16Q6N069 864 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-221ENST00000472563 SH3BP5LQ7L8J4 393 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 CLASRPQ8N2M8 674 aaKnown RBP14.63□□□□□ -0.07
SYNE1-221ENST00000472563 ZNF296Q8WUU4 475 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-221ENST00000472563 KIF1BPQ96EK5 621 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 OTUD5Q96G74 571 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 PTPN18Q99952 460 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 R3HDMLQ9H3Y0 253 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 IL1RAPL2Q9NP60 686 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 PIH1D3Q9NQM4 214 aaKnown RBP14.63□□□□□ -0.07
SYNE1-221ENST00000472563 DDTLA6NHG4 134 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-221ENST00000472563 BAG3O95817 575 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 INPP5BP32019 993 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 PPP4CP60510 307 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 PPATQ06203 517 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 PPIL2Q13356 520 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 NOL9Q5SY16 702 aaKnown RBP14.62□□□□□ -0.07
SYNE1-221ENST00000472563 CTU1Q7Z7A3 348 aaKnown RBP14.62□□□□□ -0.07
SYNE1-221ENST00000472563 ZSCAN29Q8IWY8 852 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-221ENST00000472563 BRI3BPQ8WY22 251 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 NOL10Q9BSC4 688 aaKnown RBP14.62□□□□□ -0.07
SYNE1-221ENST00000472563 ECM29Q5VYK3 1845 aa14.62□□□□□ -0.07
SYNE1-221ENST00000472563 CCL15-CCL14A0A0B4J2E2 113 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 PHF20L1A8MW92 1017 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 IRF6O14896 467 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 FKTNO75072 461 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 CETPP11597 493 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 PICALMQ13492 652 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 CCL15Q16663 113 aa14.61□□□□□ -0.07
SYNE1-221ENST00000472563 TMED8Q6PL24 325 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-221ENST00000472563 APBB1O00213 710 aa14.6□□□□□ -0.07
SYNE1-221ENST00000472563 TBC1D12O60347 775 aa14.6□□□□□ -0.07
SYNE1-221ENST00000472563 IFIT2P09913 472 aaKnown RBP14.6□□□□□ -0.07
SYNE1-221ENST00000472563 PLCG2P16885 1265 aa14.6□□□□□ -0.07
SYNE1-221ENST00000472563 SNAPC2Q13487 334 aa14.6□□□□□ -0.07
SYNE1-221ENST00000472563 TEX11Q8IYF3 940 aa14.6□□□□□ -0.07
SYNE1-221ENST00000472563 CRHR2Q13324 411 aa14.59□□□□□ -0.07
SYNE1-221ENST00000472563 PKN2Q16513 984 aaKnown RBP14.59□□□□□ -0.07
SYNE1-221ENST00000472563 ADGRA1Q86SQ6 560 aa14.59□□□□□ -0.07
SYNE1-221ENST00000472563 SCYL3Q8IZE3 742 aa14.59□□□□□ -0.07
SYNE1-221ENST00000472563 SH3RF3Q8TEJ3 882 aaPredicted RBP14.59□□□□□ -0.07
SYNE1-221ENST00000472563 OSBPL5Q9H0X9 879 aaPredicted RBP14.59□□□□□ -0.07
SYNE1-221ENST00000472563 ZCCHC17Q9NP64 241 aaKnown RBP14.59□□□□□ -0.07
SYNE1-221ENST00000472563 AATFQ9NY61 560 aaKnown RBP eCLIP14.59□□□□□ -0.07
SYNE1-221ENST00000472563 KCNH4Q9UQ05 1017 aa14.59□□□□□ -0.07
SYNE1-221ENST00000472563 IDH1O75874 414 aaKnown RBP14.58□□□□□ -0.08
SYNE1-221ENST00000472563 CYP7A1P22680 504 aa14.58□□□□□ -0.08
SYNE1-221ENST00000472563 MAP3K12Q12852 859 aa14.58□□□□□ -0.08
SYNE1-221ENST00000472563 CERS3Q8IU89 383 aa14.58□□□□□ -0.08
SYNE1-221ENST00000472563 FAM43AQ8N2R8 423 aa14.58□□□□□ -0.08
SYNE1-221ENST00000472563 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.58□□□□□ -0.08
SYNE1-221ENST00000472563 ANTXR1Q9H6X2 564 aa14.58□□□□□ -0.08
SYNE1-221ENST00000472563 COL2A1P02458 1487 aaPredicted RBP14.57□□□□□ -0.08
SYNE1-221ENST00000472563 CCDC85CA6NKD9 419 aa14.57□□□□□ -0.08
SYNE1-221ENST00000472563 CTNND1O60716 968 aaKnown RBP14.57□□□□□ -0.08
SYNE1-221ENST00000472563 TTF1Q15361 905 aaPredicted RBP14.57□□□□□ -0.08
SYNE1-221ENST00000472563 DHX36Q9H2U1 1008 aaKnown RBP14.57□□□□□ -0.08
SYNE1-221ENST00000472563 ZFYVE28Q9HCC9 887 aa14.57□□□□□ -0.08
SYNE1-221ENST00000472563 PICK1Q9NRD5 415 aa14.57□□□□□ -0.08
SYNE1-221ENST00000472563 NDUFB9Q9Y6M9 179 aa14.57□□□□□ -0.08
SYNE1-221ENST00000472563 BTBD19C9JJ37 291 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 CXCL11O14625 94 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 SLURP2P0DP57 97 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 PTPRAP18433 802 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 RRP1P56182 461 aaKnown RBP14.56□□□□□ -0.08
SYNE1-221ENST00000472563 TAF1CQ15572 869 aaPredicted RBP14.56□□□□□ -0.08
SYNE1-221ENST00000472563 MAGEB6Q8N7X4 407 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 TGFBRAP1Q8WUH2 860 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 LRRCC1Q9C099 1032 aa14.56□□□□□ -0.08
SYNE1-221ENST00000472563 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.56□□□□□ -0.08
SYNE1-221ENST00000472563 HERC5Q9UII4 1024 aaKnown RBP14.56□□□□□ -0.08
SYNE1-221ENST00000472563 SP3Q02447 781 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 MOGSQ13724 837 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 ANKRD23Q86SG2 305 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 ERO1AQ96HE7 468 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 YTHDC1Q96MU7 727 aaKnown RBP14.55□□□□□ -0.08
SYNE1-221ENST00000472563 DCTPP1Q9H773 170 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 PI4KBQ9UBF8 816 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 ZHX2Q9Y6X8 837 aa14.55□□□□□ -0.08
SYNE1-221ENST00000472563 ATP5JP18859 108 aa14.54□□□□□ -0.08
SYNE1-221ENST00000472563 DYNLL1P63167 89 aaKnown RBP14.54□□□□□ -0.08
SYNE1-221ENST00000472563 FBXO46Q6PJ61 603 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-221ENST00000472563 FOXP4Q8IVH2 680 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-221ENST00000472563 MAPKAPK5Q8IW41 473 aa14.54□□□□□ -0.08
SYNE1-221ENST00000472563 AFG3L2Q9Y4W6 797 aa14.54□□□□□ -0.08
SYNE1-221ENST00000472563 FLT1P17948 1338 aa14.54□□□□□ -0.08
SYNE1-221ENST00000472563 FAM196BA6NMK8 535 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 GOLIM4O00461 696 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 TLR2O60603 784 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 SLC9C2Q5TAH2 1124 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 METTL16Q86W50 562 aaKnown RBP14.53□□□□□ -0.08
SYNE1-221ENST00000472563 MIGA1Q8NAN2 632 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 DNAJC2Q99543 621 aaKnown RBP14.53□□□□□ -0.08
SYNE1-221ENST00000472563 BCL11AQ9H165 835 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 HPS5Q9UPZ3 1129 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 MYH13Q9UKX3 1938 aa14.53□□□□□ -0.08
SYNE1-221ENST00000472563 A0A0G2JLL6 359 aaPredicted RBP14.52□□□□□ -0.09
SYNE1-221ENST00000472563 PDHXO00330 501 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 PDE6AP16499 860 aa14.52□□□□□ -0.09
SYNE1-221ENST00000472563 CAP2P40123 477 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms