RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 LCE2DQ5TA82 110 aaPredicted RBP6.85□□□□□ -1.31
PTPN4-209ENST00000469511 MTMR14Q8NCE2 650 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 TRIM47Q96LD4 638 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 PCMTD1Q96MG8 357 aaPredicted RBP6.85□□□□□ -1.31
PTPN4-209ENST00000469511 HS3ST6Q96QI5 342 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 UNC93B1Q9H1C4 597 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 CPA4Q9UI42 421 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 AK9Q5TCS8 1911 aa6.85□□□□□ -1.31
PTPN4-209ENST00000469511 COL1A1P02452 1464 aaPredicted RBP6.85□□□□□ -1.31
PTPN4-209ENST00000469511 POTEB3A0JP26 581 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 TK2O00142 265 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 TLR2O60603 784 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 GJA8P48165 433 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 GRIK5Q16478 980 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 CWF19L2Q2TBE0 894 aaKnown RBP6.84□□□□□ -1.31
PTPN4-209ENST00000469511 POTEBQ6S5H4 581 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 DEFB123Q8N688 67 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 CCDC191Q8NCU4 936 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 METTL22Q9BUU2 404 aaPredicted RBP6.84□□□□□ -1.31
PTPN4-209ENST00000469511 TMEM39BQ9GZU3 492 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 TDRD3Q9H7E2 651 aaKnown RBP6.84□□□□□ -1.31
PTPN4-209ENST00000469511 BABAM1Q9NWV8 329 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 HYPKQ9NX55 129 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 CWC25Q9NXE8 425 aaPredicted RBP6.84□□□□□ -1.31
PTPN4-209ENST00000469511 ZNF70Q9UC06 446 aaPredicted RBP6.84□□□□□ -1.31
PTPN4-209ENST00000469511 GABRQQ9UN88 632 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 LEMD3Q9Y2U8 911 aa6.84□□□□□ -1.31
PTPN4-209ENST00000469511 TCP10L2B9ZVM9 353 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 BHMG1C9JSJ3 638 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 FARP2O94887 1054 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 GJB1P08034 283 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 GRK4P32298 578 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 PSMC4P43686 418 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 CACNB3P54284 484 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 CHRNDQ07001 517 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 SUPT20HL1Q3ZLR7 823 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 MYSM1Q5VVJ2 828 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 C17orf99Q6UX52 265 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 LAPTM4BQ86VI4 370 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 DIS3LQ8TF46 1054 aaKnown RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 U2AF1L4Q8WU68 220 aaKnown RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 ZKSCAN4Q969J2 545 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 CDC5LQ99459 802 aaKnown RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 GDF15Q99988 308 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 TBC1D2Q9BYX2 928 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 RNF208Q9H0X6 261 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 MBIPQ9NS73 344 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 MTMR10Q9NXD2 777 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 SRRDQ9UH36 339 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 ZMYND8Q9ULU4 1186 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-209ENST00000469511 RIPOR2Q9Y4F9 1068 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 PPP2R3BQ9Y5P8 575 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 SNCAIPQ9Y6H5 919 aa6.83□□□□□ -1.32
PTPN4-209ENST00000469511 ADGRA2Q96PE1 1338 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 UNCXA6NJT0 531 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 DDX11L8A8MPP1 907 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 SGPL1O95470 568 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 ELNP15502 786 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 SYN1P17600 705 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 BCAMP50895 628 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 GTF2A2P52657 109 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 RBM5P52756 815 aaKnown RBP eCLIP6.82□□□□□ -1.32
PTPN4-209ENST00000469511 PRKCZQ05513 592 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 G2E3Q7L622 706 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 C8orf58Q8NAV2 365 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 HTATIP2Q9BUP3 242 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 NBPF3Q9H094 633 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 RAPGEFL1Q9UHV5 662 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 MAP3K2Q9Y2U5 619 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 PTPRFP10586 1907 aa6.82□□□□□ -1.32
PTPN4-209ENST00000469511 MYPNQ86TC9 1320 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 SPDYE5A6NIY4 337 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 H7C1W4 665 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 FMNL1O95466 1100 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-209ENST00000469511 IL1R1P14778 569 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 ITGA6P23229 1130 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 MOGSQ13724 837 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 KIF22Q14807 665 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 UBE3BQ7Z3V4 1068 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 TSPYL6Q8N831 410 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 CCER1Q8TC90 406 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-209ENST00000469511 RAET1EQ8TD07 263 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 SPIRE2Q8WWL2 714 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 PAWRQ96IZ0 340 aaKnown RBP6.81□□□□□ -1.32
PTPN4-209ENST00000469511 SEPT9Q9UHD8 586 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-209ENST00000469511 STXBP5LQ9Y2K9 1186 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 NR2E3Q9Y5X4 410 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 UNC80Q8N2C7 3258 aa6.81□□□□□ -1.32
PTPN4-209ENST00000469511 DDX60LQ5H9U9 1706 aaKnown RBP6.81□□□□□ -1.32
PTPN4-209ENST00000469511 PI4KAP2A4QPH2 592 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 NEURL1BA8MQ27 555 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 PLIN1O60240 522 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 HOXB7P09629 217 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 ZNF853P0CG23 659 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 SLURP2P0DP57 97 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 CYP2C8P10632 490 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 INPP5BP32019 993 aa6.8□□□□□ -1.32
PTPN4-209ENST00000469511 IGHMBP2P38935 993 aaKnown RBP6.8□□□□□ -1.32
PTPN4-209ENST00000469511 CLK2P49760 499 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms