RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CEP57L1Q8IYX8 460 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 MYRIPQ8NFW9 859 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CACTINQ8WUQ7 758 aaKnown RBP10.37□□□□□ -0.75
SYNE1-217ENST00000466159 SLC26A6Q9BXS9 759 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CNNM2Q9H8M5 875 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 ABCF2Q9UG63 623 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 RTL9Q8NET4 1388 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 PNPLA7Q6ZV29 1317 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 RREB1Q92766 1687 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 SMIM22K7EJ46 135 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 BIN1O00499 593 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 DYNC1I1O14576 645 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CYP7A1P22680 504 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CMA1P23946 247 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 DPCR1Q3MIW9 517 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 SDR42E1Q8WUS8 393 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 NACAP1Q9BZK3 213 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 KRT23Q9C075 422 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 GNAT2P19087 354 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CDC25BP30305 580 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 GUCY1A2P33402 732 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 SSRP1Q08945 709 aaKnown RBP10.37□□□□□ -0.75
SYNE1-217ENST00000466159 ARID5BQ14865 1188 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 CCDC82Q8N4S0 544 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 STAG1Q8WVM7 1258 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 PRIMPOLQ96LW4 560 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 BCL9LQ86UU0 1499 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 SLC3A2P08195 630 aaKnown RBP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 U2AF2P26368 475 aaKnown RBP eCLIP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 TRIM29Q14134 588 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 PTPAQ15257 358 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 BICDL1Q6ZP65 573 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 CMTR1Q8N1G2 835 aaKnown RBP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 RGS22Q8NE09 1264 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 TSC1Q92574 1164 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 MRFAP1L1Q96HT8 127 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 CDC5LQ99459 802 aaKnown RBP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 MAP3K14Q99558 947 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 ZNF652Q9Y2D9 606 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 BCORQ6W2J9 1755 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 MINDY4BA8MYZ0 360 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 FMNL1O95466 1100 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 WTAPQ15007 396 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 SHC4Q6S5L8 630 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 ANKRD18AQ8IVF6 992 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 LINC00116Q8NCU8 138 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 CLIC6Q96NY7 704 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 NAT10Q9H0A0 1025 aaKnown RBP10.36□□□□□ -0.75
SYNE1-217ENST00000466159 RAI14Q9P0K7 980 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 LAMB2P55268 1798 aa10.36□□□□□ -0.75
SYNE1-217ENST00000466159 TIAM2Q8IVF5 1701 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 IFNAR1P17181 557 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 PPARAQ07869 468 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 ZRSR1Q15695 479 aaKnown RBP10.35□□□□□ -0.75
SYNE1-217ENST00000466159 ISM2Q6H9L7 571 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 BTBD18B2RXH4 712 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 PPP6R2O75170 966 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 SYKP43405 635 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 RTN1Q16799 776 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 GLIPR1L2Q4G1C9 344 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 CLEC4GQ6UXB4 293 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 BARGINQ6ZT62 677 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 SMARCC1Q92922 1105 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-217ENST00000466159 KCNJ14Q9UNX9 436 aa10.35□□□□□ -0.75
SYNE1-217ENST00000466159 ZNF804BA4D1E1 1349 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 STK36Q9NRP7 1315 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 COL1A1P02452 1464 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 MAGEB6P1A0A0J9YX57 407 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 ERICH2A1L162 156 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 SART3Q15020 963 aaKnown RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 FILIP1Q7Z7B0 1213 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 LRRC8AQ8IWT6 810 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 NUP133Q8WUM0 1156 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 CELF1Q92879 486 aaKnown RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 HPSEQ9Y251 543 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 NLRP12P59046 1061 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 DYNLL1P63167 89 aaKnown RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 SF3B3Q15393 1217 aaKnown RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 FAM98CQ17RN3 349 aaKnown RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 PTF1AQ7RTS3 328 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 NBPF11Q86T75 865 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 PDCL3Q9H2J4 239 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 BSDC1Q9NW68 430 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-217ENST00000466159 MINPP1Q9UNW1 487 aa10.34□□□□□ -0.75
SYNE1-217ENST00000466159 COL5A3P25940 1745 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 CYP2D7A0A087X1C5 515 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 MMP1P03956 469 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 RBM6P78332 1123 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 UBE4AQ14139 1066 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 TBC1D9BQ66K14 1250 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 NOSTRINQ8IVI9 506 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 ZNF654Q8IZM8 581 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 JMYQ8N9B5 988 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 FAM84BQ96KN1 310 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 C16orf45Q96MC5 204 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 RIOK1Q9BRS2 568 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 RNF41Q9H4P4 317 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 GNL3LQ9NVN8 582 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 CICQ96RK0 1608 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms