RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DOCK2Q92608 1830 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 UQCRFS1P1P0C7P4 283 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 TIMM10P62072 90 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 RABEP1Q15276 862 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 APOBEC3HQ6NTF7 200 aaKnown RBP14.15□□□□□ -0.14
USP54-209ENST00000464635 CTU1Q7Z7A3 348 aaKnown RBP14.15□□□□□ -0.14
USP54-209ENST00000464635 KBTBD3Q8NAB2 608 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 ZNF296Q8WUU4 475 aaPredicted RBP14.15□□□□□ -0.14
USP54-209ENST00000464635 CNKSR2Q8WXI2 1034 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 XAGE2Q96GT9 111 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 BOLA2Q9H3K6 86 aa14.15□□□□□ -0.14
USP54-209ENST00000464635 TLR7Q9NYK1 1049 aaKnown RBP14.15□□□□□ -0.14
USP54-209ENST00000464635 MAST3O60307 1309 aa14.15□□□□□ -0.15
USP54-209ENST00000464635 GPR25O00155 361 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 IGF2BP3O00425 579 aaKnown RBP eCLIP14.14□□□□□ -0.15
USP54-209ENST00000464635 ZFYP08048 801 aaPredicted RBP14.14□□□□□ -0.15
USP54-209ENST00000464635 PRDX5P30044 214 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 DIXDC1Q155Q3 683 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 TMED8Q6PL24 325 aaPredicted RBP14.14□□□□□ -0.15
USP54-209ENST00000464635 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.14□□□□□ -0.15
USP54-209ENST00000464635 ANKRD13AQ8IZ07 590 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 WDR66Q8TBY9 1149 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 NEUROD6Q96NK8 337 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 KIF2CQ99661 725 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 ELP3Q9H9T3 547 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 DIAPH3Q9NSV4 1193 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 DAXXQ9UER7 740 aaPredicted RBP14.14□□□□□ -0.15
USP54-209ENST00000464635 SUGT1Q9Y2Z0 365 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 DAGLAQ9Y4D2 1042 aa14.14□□□□□ -0.15
USP54-209ENST00000464635 MANSC4A6NHS7 340 aaPredicted RBP14.13□□□□□ -0.15
USP54-209ENST00000464635 ZBTB48P10074 688 aaPredicted RBP14.13□□□□□ -0.15
USP54-209ENST00000464635 ARID4AP29374 1257 aaPredicted RBP14.13□□□□□ -0.15
USP54-209ENST00000464635 TNNI2P48788 182 aa14.13□□□□□ -0.15
USP54-209ENST00000464635 TTF1Q15361 905 aaPredicted RBP14.13□□□□□ -0.15
USP54-209ENST00000464635 HHIPL2Q6UWX4 724 aa14.13□□□□□ -0.15
USP54-209ENST00000464635 KIAA1211Q6ZU35 1233 aa14.13□□□□□ -0.15
USP54-209ENST00000464635 IFNL1Q8IU54 200 aa14.13□□□□□ -0.15
USP54-209ENST00000464635 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP54-209ENST00000464635 KCNB2Q92953 911 aa14.13□□□□□ -0.15
USP54-209ENST00000464635 RPAP1Q9BWH6 1393 aaPredicted RBP14.12□□□□□ -0.15
USP54-209ENST00000464635 UNCXA6NJT0 531 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 VGLL4Q14135 290 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 CCDC102BQ68D86 513 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 OPTNQ96CV9 577 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 MRIQ9BWK5 157 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 CFHR5Q9BXR6 569 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 HELLSQ9NRZ9 838 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 PAG1Q9NWQ8 432 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 TMOD2Q9NZR1 351 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 ZSWIM8A7E2V4 1837 aa14.12□□□□□ -0.15
USP54-209ENST00000464635 MYO5AQ9Y4I1 1855 aaKnown RBP14.12□□□□□ -0.15
USP54-209ENST00000464635 HSPA4P34932 840 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 MCM2P49736 904 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 RASGRF1Q13972 1273 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 TTC39AQ5SRH9 613 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 GORABQ5T7V8 394 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 PTPN18Q99952 460 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 FSD1Q9BTV5 496 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 LSG1Q9H089 658 aaKnown RBP14.11□□□□□ -0.15
USP54-209ENST00000464635 SALL1Q9NSC2 1324 aa14.11□□□□□ -0.15
USP54-209ENST00000464635 MAST2Q6P0Q8 1798 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 LDHBP07195 334 aaKnown RBP14.1□□□□□ -0.15
USP54-209ENST00000464635 NFIAQ12857 509 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 TSGA10IPQ3SY00 556 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 NOM1Q5C9Z4 860 aaKnown RBP14.1□□□□□ -0.15
USP54-209ENST00000464635 ZSCAN25Q6NSZ9 544 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 CDC42EP5Q6NZY7 148 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 FAM83AQ86UY5 434 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 MAP4K1Q92918 833 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 BCL11AQ9H165 835 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 GNL3LQ9NVN8 582 aaKnown RBP14.1□□□□□ -0.15
USP54-209ENST00000464635 DENND2AQ9ULE3 1009 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 SNCAIPQ9Y6H5 919 aa14.1□□□□□ -0.15
USP54-209ENST00000464635 PDS5AQ29RF7 1337 aaKnown RBP14.1□□□□□ -0.15
USP54-209ENST00000464635 TNRC18O15417 2968 aaPredicted RBP14.1□□□□□ -0.15
USP54-209ENST00000464635 TESPA1A2RU30 521 aaPredicted RBP14.09□□□□□ -0.15
USP54-209ENST00000464635 SEMA3EO15041 775 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 FKTNO75072 461 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 ALDH1A1P00352 501 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 RGS19P49795 217 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 SOX10P56693 466 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 INHBEP58166 350 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 MAP3K9P80192 1104 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 TCP10Q12799 353 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 CRHR2Q13324 411 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 FKBP1CQ5VVH2 108 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 OTUD5Q96G74 571 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 MS4A4AQ96JQ5 239 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 WRNIP1Q96S55 665 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 ANO2Q9NQ90 1003 aa14.09□□□□□ -0.15
USP54-209ENST00000464635 MCMDC2Q4G0Z9 681 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 CWC27Q6UX04 472 aaKnown RBP14.08□□□□□ -0.16
USP54-209ENST00000464635 PI16Q6UXB8 463 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 MIGA2Q7L4E1 593 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 BRI3BPQ8WY22 251 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 ZKSCAN4Q969J2 545 aaPredicted RBP14.08□□□□□ -0.16
USP54-209ENST00000464635 TBC1D2Q9BYX2 928 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 TM6SF1Q9BZW5 370 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 FAM198AQ9UFP1 575 aa14.08□□□□□ -0.16
USP54-209ENST00000464635 HPS5Q9UPZ3 1129 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms